Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3077 ATGGgcggttgctgttgttgttctTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCTTACTATTATTATCCAAGAGCGTTAGAGGAGCATGTTCTTCTATCATCTCACCAGGGTGCTGCTTCTGCTTTCACTGGGCGGCTCTTGGTTGATACAAATCTAGATACTTCATCTCCGGATACTTATAGACCTCCTCTTGCTCCTATCCCATTCAATGTTACGTTACAAACTCCACCTACGGCTCAAGAAATTTGTAGTGACAAGAATAATACATCCTTGCATTCTACAAATTCTAATACAATTCAAGAACTAGTTGCAGGAGACAACCATGGGACCCCAGCTAAGTTGGAAGAGCTGAAGGAATCAGAGTGCAAAGTTCAGATTGATCTAGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCAAAGTCAGGAAAACCTATCGATGTAGTAAAAGAGGAGGATACATGCCCAATTTGTTTAGAAGCAAAATATGATGTAGAGAATCCAAAACTTGCAACAAAATGTGatcaccattttcattttgcATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCTTGTGTGCGATCAGGTTGGTAGAATTGGTCCTTCATTAACTTTGTTTGTTGATGTGGCTGATGATTTACAGAACTAA 666 0.3844 MGGCCCCSSSKETVLSAPPAYYYYPRALEEHVLLSSHQGAASAFTGRLLVDTNLDTSSPDTYRPPLAPIPFNVTLQTPPTAQEICSDKNNTSLHSTNSNTIQELVAGDNHGTPAKLEELKESECKVQIDLELDSAKGSEIELAKSGKPIDVVKEEDTCPICLEAKYDVENPKLATKCDHHFHFACILEWMERSETCLVCDQVGRIGPSLTLFVDVADDLQN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3077 221 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 202 - -
Ssu5g3077 221 Pfam Ring finger domain 156 199 IPR001841 -
Ssu5g3077 221 SMART ring_2 158 199 IPR001841 -
Ssu5g3077 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 206 IPR013083 -
Ssu5g3077 221 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Ssu5g3077 221 SUPERFAMILY RING/U-box 152 202 - -
Ssu5g3077 221 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3077 Ssu-Chr5 78401418 78404126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3077 1 201 C3H Transcription Factor Family AT5G41350 52.174 1.84e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3077 - - gmx:100816369 353.214