Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g3077 | ATGGgcggttgctgttgttgttctTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCTTACTATTATTATCCAAGAGCGTTAGAGGAGCATGTTCTTCTATCATCTCACCAGGGTGCTGCTTCTGCTTTCACTGGGCGGCTCTTGGTTGATACAAATCTAGATACTTCATCTCCGGATACTTATAGACCTCCTCTTGCTCCTATCCCATTCAATGTTACGTTACAAACTCCACCTACGGCTCAAGAAATTTGTAGTGACAAGAATAATACATCCTTGCATTCTACAAATTCTAATACAATTCAAGAACTAGTTGCAGGAGACAACCATGGGACCCCAGCTAAGTTGGAAGAGCTGAAGGAATCAGAGTGCAAAGTTCAGATTGATCTAGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCAAAGTCAGGAAAACCTATCGATGTAGTAAAAGAGGAGGATACATGCCCAATTTGTTTAGAAGCAAAATATGATGTAGAGAATCCAAAACTTGCAACAAAATGTGatcaccattttcattttgcATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCTTGTGTGCGATCAGGTTGGTAGAATTGGTCCTTCATTAACTTTGTTTGTTGATGTGGCTGATGATTTACAGAACTAA | 666 | 0.3844 | MGGCCCCSSSKETVLSAPPAYYYYPRALEEHVLLSSHQGAASAFTGRLLVDTNLDTSSPDTYRPPLAPIPFNVTLQTPPTAQEICSDKNNTSLHSTNSNTIQELVAGDNHGTPAKLEELKESECKVQIDLELDSAKGSEIELAKSGKPIDVVKEEDTCPICLEAKYDVENPKLATKCDHHFHFACILEWMERSETCLVCDQVGRIGPSLTLFVDVADDLQN | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g3077 | 221 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 1 | 202 | - | - | |
Ssu5g3077 | 221 | Pfam | Ring finger domain | 156 | 199 | IPR001841 | - | |
Ssu5g3077 | 221 | SMART | ring_2 | 158 | 199 | IPR001841 | - | |
Ssu5g3077 | 221 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 206 | IPR013083 | - | |
Ssu5g3077 | 221 | ProSiteProfiles | Zinc finger RING-type profile. | 158 | 200 | IPR001841 | - | |
Ssu5g3077 | 221 | SUPERFAMILY | RING/U-box | 152 | 202 | - | - | |
Ssu5g3077 | 221 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 202 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g3077 | Ssu-Chr5 | 78401418 | 78404126 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g3077 | 1 | 201 | C3H Transcription Factor Family | AT5G41350 | 52.174 | 1.84e-63 | 194 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g3077 | - | - | gmx:100816369 | 353.214 |