Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3076 ATGGAAGGATGGTCAACATTCTCAAATGGGTCTTCCTTAGACTGCCTTGGAGTTGAAACTGTTGGTGCATTTCATGGTGCTGACCATGACAAACTTAGACAAAAATGCTTGTTTAATCAACTCTTTCCGGCTTACCTGAAGGATAATTGTTCTAAAGGCGGTGTTCGGCCTGTGCCGGTTTTGGTAGACGGTCAACGGCTAGATTTGTACAAACTGTTCTCCCTGGTGAAGGAAAGAGGTGGGTATGCTGAGGTGTCGAAAAAAGGATTGTGGGGGTCTGTGGCCAAGGAATTGGGTTTGAACCATGGAGTTTGCTCATCGGTGAAATTAGTTTGTGATAAGTATCTGAATGATTTTGAAAGGTGGCTCAAGAAAACTTTTGAAgagaagaatttaaaaaatgggaGTCATGGGTGTGATTGGGGTTTTAAGGGGTTGCCATTGGATGAAGAGAAAGAGTTCAGTGGCTTGTTATGTCCAAATCTAAAGGACAAAGATGATGATGAACTTGTCAAGTcagaatcaaataaaattaagaaaaatattgatttggTTAACCGCAAGAATGATACTAATTTATTGGACACCaatgatcaaaataataaatctgAGGATGTCCAACACATTGATGGTGATAATGATGAAAAATCCTGTAATGGTTTTAAGGAAGATCCTGCTACCTTGGGTGCAGAAGGTGCTGAGAAGGAACTTAACCCTCGCAAACGCAAACGGGAATCATTATCTGGCATGCTAAACTGGATGAAGCATATTGCAAAGAATCCTCTTGATCCTTTAACTCAACCGATACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCCAGGACTGTTTTGGTCAATTTCTGAGGGCAAGAGAGGTTTTGTCACTGAGACCCCATGAAGAACCAAACAGTGGACCTTCTTCTTTCCAGAAGCAGAAGATGCATCCTGCCATGTATGAGGATCATGTTGCTCTTGGTCGCCATGCTACGGGGAAATTGAGATGTAGTGAAAGGCTGCCTTCCTCTGTTAAACATCGGTCGTGCTCTTGCTGCAATCCATGTTCCCCCAATGGAAATAGATTGGCAGGTTCACTCAATATGGAAGCAGAAAAAAGTCCTctggagaaaaaagaaacactAGATGAATTGACTGCAAAATCAATAGCTGAATCATATGGGGATGATTCTCTCGAAAAGCAAGTTTCTATAGGTCCTCGTTTTCAAGCAGAAGTCCCAAAATGGACCGGTATAATTTCTGAGAGTGACTCTAAATGGTTAGGCACACAAGTATGGCCTTTGAAACATGACTCAAAACCTGCTACTGAAACAGATCTTGGGAGAGAAAGACAAGAGAAGTGTATCTGCAAACTTCAAGGTTCTGTTGCGTGTGTTAGATTACATATTGCTGAAAATAGGATGAAATTGAAGCTTGAATTGGGTTCTGTATTTTACCATTGGGGATTTGATCGTATGGGTGAGGAAGTTTCACTTCCATGGACaactgaagaagaaaagaaatttaaggatatcatgaaatcaaatattccctcaaaaaataaatatttttggaacaATCCATCCAAATACTTTCCAAAGAAGACAAGAAGAAACTTGGTGAGCTATTACttcaatgtatttcttattcAACTAAGAAGCTATCAGAACCGGGTGACTCCAAAGAATGTTGATAGCGACGATGATGAAGTACAATTTGGATCTTTAAGTGATGGTTTTGGGATGGAAGCTGTCAAGGAGGGTCCTGGTGATAATTTCCTGAAGTGTTCTCTGAACAAGCAGTACCCTGATTTGGAGTAG 1815 0.3774 MEGWSTFSNGSSLDCLGVETVGAFHGADHDKLRQKCLFNQLFPAYLKDNCSKGGVRPVPVLVDGQRLDLYKLFSLVKERGGYAEVSKKGLWGSVAKELGLNHGVCSSVKLVCDKYLNDFERWLKKTFEEKNLKNGSHGCDWGFKGLPLDEEKEFSGLLCPNLKDKDDDELVKSESNKIKKNIDLVNRKNDTNLLDTNDQNNKSEDVQHIDGDNDEKSCNGFKEDPATLGAEGAEKELNPRKRKRESLSGMLNWMKHIAKNPLDPLTQPIPKPSKWKEYKGQDCFGQFLRAREVLSLRPHEEPNSGPSSFQKQKMHPAMYEDHVALGRHATGKLRCSERLPSSVKHRSCSCCNPCSPNGNRLAGSLNMEAEKSPLEKKETLDELTAKSIAESYGDDSLEKQVSIGPRFQAEVPKWTGIISESDSKWLGTQVWPLKHDSKPATETDLGRERQEKCICKLQGSVACVRLHIAENRMKLKLELGSVFYHWGFDRMGEEVSLPWTTEEEKKFKDIMKSNIPSKNKYFWNNPSKYFPKKTRRNLVSYYFNVFLIQLRSYQNRVTPKNVDSDDDEVQFGSLSDGFGMEAVKEGPGDNFLKCSLNKQYPDLE 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3076 604 SMART bright_3 33 125 IPR001606 GO:0003677
Ssu5g3076 604 Gene3D - 27 136 IPR036431 GO:0003677
Ssu5g3076 604 CDD ARID 38 120 - -
Ssu5g3076 604 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 603 - -
Ssu5g3076 604 MobiDBLite consensus disorder prediction 228 243 - -
Ssu5g3076 604 SMART ARID_2 29 120 - -
Ssu5g3076 604 SUPERFAMILY ARID-like 37 125 IPR036431 GO:0003677
Ssu5g3076 604 ProSiteProfiles ARID domain profile. 32 124 IPR001606 GO:0003677
Ssu5g3076 604 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 603 - -
Ssu5g3076 604 MobiDBLite consensus disorder prediction 191 243 - -
Ssu5g3076 604 MobiDBLite consensus disorder prediction 201 221 - -
Ssu5g3076 604 Pfam ARID/BRIGHT DNA binding domain 41 120 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3076 Ssu-Chr5 78377686 78382605 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu5g3076 ARID 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3076 - - gmx:100819320 1003.82