Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3069 ATGCCGCCGTGGTGGGGAAAGTCTTCTTCCAAAGACAAAGAGGTGAAGAGGAAGGCAAACAGGGAAAGTATTATTGATACAATACAGCGGAAATTAAAGAATGCTTCTGAGGAGAAGTGCAATAATAAATCAGGAAGATCAAGGAGACATCATGATGAATCTATCTCCAAGAAGGGATCTAGATCTCTCGCACCTTCAAGATCACCATCACCCTCTATACTTGTGTCCCGCTGTCAAAGTTTTGCAGAAAGGCCTCGTTCTCAGCCACTCCCATTACCAGGGTCACACCTTCCCGCTGCTTTTGATGCAAATTCTGGACTTATTTTATCATCAAAACTGGAAAGAGCCATAGGCTCTAAGCCATCTCTATATTTTCCTCTTCCAAAACCTGGTTATGTATTATCTAACAAGGAAGACCCTACAGATGCTGAAGGAAATATAGCCACTGCATCTGTTTCTAGTGACAGCTCAATTGATAGTGGCAACTCATTTGATTCGCCGCATCTTGTTAGTCCTCTGGCACCTGACTGTGAAAATGGAAACAGAGCCACCATTAATAGTTCTTTCAGTGTGGTGCACAAGAATCAATCACTTATTACTATCCAAAGAAACTCAAAAGCATCCTCAAAAGCATCTCCTCAATTGTGCAATAATAAGCCTTTATCTACCTCACCAAAAGGGGTTCCTTTACATATGCAAAATCTGCAAATGGCTCGCCCAGGTGGTTTGTGCAGTGCTCCTGATAGTTCAATGTCATGTCCTTCTAGAAGTCCAATGGGAGCATTTGGTCCTGAGCACATGTTGAACTCTGGATTATGGACAGGATGGCCTTATCCAGATATAGCTTCTGGGCACTGCTCTAGTCCGGTTTCAGGCCATAATTCTGGTCATAATTCAGTTGGAGGGGATCTGTCGGGACAGATGTTTTGGCCACAGAACAGGTGTAGCCCCGAGTGTTCTCCAATTCCTAGTCCCAGAATGACAAGCCCTGGTCCCAGTTCCAGGATACAGAGTGGTACTGTGACCCCTCTGCATTCTCAAGCTGGAGGTGCTGCAGGAGAAGCACCTACAAGACGTCCTGACGATGTGAAACAACAAACTCATCAGTTACCACTTCCTCCAATAACAGTCACTAAATCTGGTCTGTTTTCTCCAACTTATTCTGCATCCACAACTCCTTCAGCCCCTCGTAGTCCTGCCAGATCAGAAAATCCAACAAGCTCAGGTTCACGCTGGAAAAAGGGGCAGTTGCTTGGAAGGGGAACGTTTGGACATGTATATCTTGGTTTTAACAGAGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCAGATGATGCTAAATCAAGTGAAAGTGCACAACAACTTGGCCAAGAAATTGCACTGCTTAGTCAGTTGCGGCATCCAAATATTGTTCAGTATTATGGATCTGAGacgGTAGATGACAAACTTTATGTATACTTGGAGTATGTTTCTGGTGGTTCAATCTATAAACTGGTTCAAGAATATGGCCAGTTAGGTGAAATTGCTATTCGTAATTATACTCGGCAAATTCTTTTAGGACTTGCATATTTGCACGCTAAGAACACTGTTCACAGGGACATTAAAGGAGCAAACATATTGGTGGACCCTAGTGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATATAAGCGGACCGTCTTGTCCATTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgttataaaaaattcaagtgGTTGTAATCTTGCGGTTGATATATGGAGTCTCGGATGCACTGTTTTGGAGATGGCGACAACAAAACCTCCTTGGAGCCAGTATGAAGGGGTTGCTGCTATGTTTAAGATTGGGAACAGCAAGGAACTTCCTACAATTCCAGATCATCTATCAGAAGATGGAAAAGATTTTGTCAGGCTTTGTTTGCAAAGGAATCCTCTAAATCGTCCCTCAGCTGCTCAACTTCTAGAGCATCCATTTGTTAAAAATGCTATGCTGGAAAGATCCATTTTGGCTGCCGTACCTTCAGAAGCACCACCTGATGTAATAAATGCAGTGAGATCTCTGGCCATTGGACCTgcaaaacataatttttgtttagacTCGGAAGTGGCTGGGATCTATCCACTTAGAAGCTTGAGAACTGGTTCTGGATCAAGTGATGCACATGCACCAAGGAACATCTCTTGTCCAGTATCTCCCTCTGGGAGCTTACTTTTGCCTTATAAATCATTGCATACAAGTGGAAGGATGTCTCCTTCTCCAATATCTAGCCCTCATACTGCGTCTGGCTCATCTTCGCCACTAACCAGCGGTGGCGGTGCTATTCCATTTCATCAGACAAAGCAACCAATATTCTCACATGATGTCGTGGGTATGATCCAAAAGTCTCAGAatgatttttattcaaatggAACCGTTGCCTATCAGGGGTCTAAGCATGAGCAGTTTGGGAGAAACTTGCAAACTACACATGCTTGCCGGGATGTAGTCTCGTATGATAATGGTGCTCTTCTAAACCATACTAGGATGGCTGCCCAGGGAGACCCAATAGAATTTCGTGATGGGAAGTCATACTTGGCTGATTGTGTGTCACAGCAGCTGTTGAGGGATTATGTACGGTTAAATGCATGCCTGGATCTTATGCCCGATGCCTCAAAGCATGATCGCAGTAATGACTTGTGA 2706 0.4324 MPPWWGKSSSKDKEVKRKANRESIIDTIQRKLKNASEEKCNNKSGRSRRHHDESISKKGSRSLAPSRSPSPSILVSRCQSFAERPRSQPLPLPGSHLPAAFDANSGLILSSKLERAIGSKPSLYFPLPKPGYVLSNKEDPTDAEGNIATASVSSDSSIDSGNSFDSPHLVSPLAPDCENGNRATINSSFSVVHKNQSLITIQRNSKASSKASPQLCNNKPLSTSPKGVPLHMQNLQMARPGGLCSAPDSSMSCPSRSPMGAFGPEHMLNSGLWTGWPYPDIASGHCSSPVSGHNSGHNSVGGDLSGQMFWPQNRCSPECSPIPSPRMTSPGPSSRIQSGTVTPLHSQAGGAAGEAPTRRPDDVKQQTHQLPLPPITVTKSGLFSPTYSASTTPSAPRSPARSENPTSSGSRWKKGQLLGRGTFGHVYLGFNRESGEMCAMKEVTLFSDDAKSSESAQQLGQEIALLSQLRHPNIVQYYGSETVDDKLYVYLEYVSGGSIYKLVQEYGQLGEIAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPSGRIKLADFGMAKHISGPSCPFSFKGSPYWMAPEVIKNSSGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSEDGKDFVRLCLQRNPLNRPSAAQLLEHPFVKNAMLERSILAAVPSEAPPDVINAVRSLAIGPAKHNFCLDSEVAGIYPLRSLRTGSGSSDAHAPRNISCPVSPSGSLLLPYKSLHTSGRMSPSPISSPHTASGSSSPLTSGGGAIPFHQTKQPIFSHDVVGMIQKSQNDFYSNGTVAYQGSKHEQFGRNLQTTHACRDVVSYDNGALLNHTRMAAQGDPIEFRDGKSYLADCVSQQLLRDYVRLNACLDLMPDASKHDRSNDL 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3069 901 Gene3D Transferase(Phosphotransferase) domain 1 409 691 - -
Ssu5g3069 901 ProSiteProfiles Protein kinase domain profile. 412 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3069 901 MobiDBLite consensus disorder prediction 291 416 - -
Ssu5g3069 901 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Ssu5g3069 901 SMART serkin_6 412 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3069 901 MobiDBLite consensus disorder prediction 750 781 - -
Ssu5g3069 901 MobiDBLite consensus disorder prediction 369 413 - -
Ssu5g3069 901 MobiDBLite consensus disorder prediction 754 781 - -
Ssu5g3069 901 MobiDBLite consensus disorder prediction 329 345 - -
Ssu5g3069 901 MobiDBLite consensus disorder prediction 203 225 - -
Ssu5g3069 901 MobiDBLite consensus disorder prediction 291 319 - -
Ssu5g3069 901 Pfam Protein kinase domain 413 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3069 901 MobiDBLite consensus disorder prediction 1 74 - -
Ssu5g3069 901 CDD STKc_MEKK1_plant 411 668 - -
Ssu5g3069 901 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 814 - -
Ssu5g3069 901 MobiDBLite consensus disorder prediction 9 58 - -
Ssu5g3069 901 Coils Coil 18 38 - -
Ssu5g3069 901 MobiDBLite consensus disorder prediction 59 74 - -
Ssu5g3069 901 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 814 - -
Ssu5g3069 901 SUPERFAMILY Protein kinase-like (PK-like) 410 733 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3069 Ssu-Chr5 78203671 78209472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3069 3 899 MAP Kinase Kinase Kinase AT1G63700 58.480 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu5g3069 Pkinase 7.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3069 K20717 - gmx:100814422 1329.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3069 5 78203671 78209472 Ssu1g2562 1 70151017 70156418 PCT