Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3067 ATGGAGAATAAAGAGGAGGATGTTAAGGTTGGAGCAAACAAATTCTCAGAAAGGCAACCACTGGGGATAGCAGCTCAGGGTGACAAGGACTACAAGGAGCCACCCCCAGCTCCATTGTTTGAGCCTGGTGAGCTCAAGTCATGGTCCTTCTACAGAGCTGGGATTGCTGAGTTTGTGGCCACCTTCTTGTTCCTCTACATAACCATCTTAACTGTCATGGGTGTCAACAGGTCACCCACCAAGTGCTCCTCTGTTGGCATTCAAGGCATTGCTTGGGCCTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATCTCAGGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTCTTGGCAAGGAAGCTGTCCCTCACAAGGGCACTGTTCTACATTGTCATGCAGTGTCTTGGAGCCATCTGTGGGGCTGGTGTGGTGAAGGGCTTTGAGGGTAACGCTAGGTATGAGATGTTCAAAGGTGGAGCAAATTTTGTGAATTCCGGATACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTTGGCACTTTTATTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTATTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCCATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGAGCTGCCATTATCTACAACAGGGACCATGCATGGGATGATCAGTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCTGCCGTGTATCATCAGATAGTCATCCGAGCCATTCCTTTCAAGGCAAGGGCTTAA 864 0.4965 MENKEEDVKVGANKFSERQPLGIAAQGDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVNRSPTKCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFEGNARYEMFKGGANFVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDQWIFWVGPFIGAALAAVYHQIVIRAIPFKARA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3067 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Ssu5g3067 287 TIGRFAM MIP: MIP family channel proteins 56 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g3067 287 PANTHER AQUAPORIN PIP1-3 1 286 - -
Ssu5g3067 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g3067 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g3067 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g3067 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g3067 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g3067 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g3067 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g3067 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Ssu5g3067 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Ssu5g3067 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g3067 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3067 Ssu-Chr5 78192068 78193403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3067 1 287 Major Intrinsic Protein MIP AT3G61430 85.714 1.43e-176 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3067 K09872 - gmx:100793242 570.466