Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3065 ATGGCAAGAAGATCTCCTCAGCGGGTCAACCAAACGTACGATACAGGTTGTACATGGCGAATGTTTAGAATCTTCAATTTTCATGAAGGTCATTCTGACAGAAGATTGGTTTCCAATAGGAGGCATTTCAATGCTCATGCTAATGGAAATGGAAACTCCAGAAGTAGCTCTGATGTGCTTAGCACAGTGGATGAGAAGTACCTTCAAATTGGTGTAAGTTCcagaagaaaaagagattaTAATTGTAAAAGTATCAGCAGCGTGGATAATGATCAGGTAGCAGAGTGGAGAGATGAAGTAACAAAGATGATTGTTGATCAGATAtttgtcaacaaacataatCAAGACAAAGATGGGGCAGGGTGTCAGCCTAATCAATTCTTGGATGCTTTACAGATTTTATATTCAAACAAGGAGCTTTTCATAAAACTTCTGCAAGATCCAAACTCTCTACTAGTAAAACAGATTCATGAATTACAGAGTTCTCAAGTGAAAGAAACATATCAGCAGGCAAGGCAAAAGAGGATGACTAGATTAAATATACCTCAAAATAGCAATGCTACACAATGTGTAAAACCTTTTAAGTCCTTTGATAGATATGATTTGAGTTCAAGTAGTAAGCCTCAATCCTCAAACAGAATAGTAGTTTTGAAGCCTGGCACTGTTAATGAGGAAAATTTTGTGGAAGCAAGCTTTGGCTGCCCTCCCCGTTCGCCTAATAGCTTCAGTTCTAATGCACAAAATATCAGGCCTTCGCATTTTCTCTTTAGTTgtataaagagaaaattgaaGCACGTCATGAGAGTAAGGAGACAAGAACAGCAGTGGAGGACAGCTGATGAAATGCCATGTAAATTGTCCTGCAGTTCCCAGTGCTTGGAAGATggtaaaaaagtgaaagaattgGATATTGCTGAAAGAAATTCACCAATTAATGTCCATAATAATACTGGAAAAAGGTTGAATTCATATCTTGATTTGAAGAAGAGGGACAATATTATCAAGTTGAAGGATTCTGAGTTATGCATGGGGCAGGAAGCTGCTTCATTTGATGCAAGTTACAGTGACAACACATACAATACTTCAGTTGGCCCTTGTGAGCAAAATATATCAAACATGCATGTTGAAGGTAGGAAAGGTCCATCTCAGATGTTAAACTGTGGAATTGAGGAATGTAAACAGTGCACAAGCTCTCTAGGGAGATCAATTCCTCTTCCTGACCTTTTGTCCTTGCCAAGCTTGCATAGGTACTGCGACCACAGTTCCATCACTGAAAGGATGAGAGATTACAACAACTATCAAATGGTCCTCAGAAACAGGTTGGGGCATCAGAAAGAAGGGGAAAATGGTTCCTATAATTCTTTGGGATCGAAAATCAAGGATCCACCAGTGGCCATTGTTGATATACCTACTGATGATAATTTGCAACTTTTTGGTGAAGATAGTAGTATCAGAAATAGTGTTCCTGACGACAATCTACATGCACATTATGATATTCCTAGAGATGGCAGATATAAGGACAGTCATACTCAGAACATcgaaataaataatagaactGGAGGAAGTGGATCTTTTCTGGATTTGCATACAGAGATCCAGGCTTTGTCTTTTTCACCAGATGTTGCTTCATCAAGCCTTTCATCCTGTCAGATAACAGAAGATACTGTAAAAATGGGAAACAGAGTTAAGCACCCCACCGAATCTGTTGTTGACAAATTTATTAGGGATGATGTTACCAACCCACCAATCACCATCTTTCAACCAGATGAGTCACCAGTACAAGCAATGCGTGACAAATTTGAAGAGAACCAGTTTGAAGACCTCATAAGACTCTCTTTGGATCCAATAAACAATTTAACCTCCTCCAAGGACATGTTAGACTATCTAAGGGAAATTCTGCAAGCTTTCAGCTTAAAATGGGATGAGCTTATTCTGAAGAGATCATGTGACCAATTGCTGGATCCATCCACCTTTGTTGAACTGAAGGAACTAACTCGTCAACTTTCTGGTGGCACGATCTTGCATGACTGTATCACCGAAACATTCATGCAGGTATACCAGAACTGTGGTTTCCCACCTCATGTTTCAACAAAAAATCCAAACGTCCAAGCATATGTTGTGAAGAAACTTCTGGTTAAAGAGATTACAGAAGTCGTTAACATGCACTTTCACACTCATCCATCAACTTTAACGTTAGAGCAGCTTGTTGAAAAGGACTTAACAAGACGTGGTTCTTGGCTAAATATCCAAGTTGATACAGAAGATATTGCACTAGAGGTGGAGAAAGATGTTCTTGAAAAACTGGTATTGGAAATCGCATCTGAGATGGATATCATAAACATGACATATTGCAATGAAAATGAACCTGTGTCTACTTGCTCGGGGGATGATAAAGCACTTTGGAAGGATTATCTAGCTaccattttttga 2430 0.3782 MARRSPQRVNQTYDTGCTWRMFRIFNFHEGHSDRRLVSNRRHFNAHANGNGNSRSSSDVLSTVDEKYLQIGVSSRRKRDYNCKSISSVDNDQVAEWRDEVTKMIVDQIFVNKHNQDKDGAGCQPNQFLDALQILYSNKELFIKLLQDPNSLLVKQIHELQSSQVKETYQQARQKRMTRLNIPQNSNATQCVKPFKSFDRYDLSSSSKPQSSNRIVVLKPGTVNEENFVEASFGCPPRSPNSFSSNAQNIRPSHFLFSCIKRKLKHVMRVRRQEQQWRTADEMPCKLSCSSQCLEDGKKVKELDIAERNSPINVHNNTGKRLNSYLDLKKRDNIIKLKDSELCMGQEAASFDASYSDNTYNTSVGPCEQNISNMHVEGRKGPSQMLNCGIEECKQCTSSLGRSIPLPDLLSLPSLHRYCDHSSITERMRDYNNYQMVLRNRLGHQKEGENGSYNSLGSKIKDPPVAIVDIPTDDNLQLFGEDSSIRNSVPDDNLHAHYDIPRDGRYKDSHTQNIEINNRTGGSGSFLDLHTEIQALSFSPDVASSSLSSCQITEDTVKMGNRVKHPTESVVDKFIRDDVTNPPITIFQPDESPVQAMRDKFEENQFEDLIRLSLDPINNLTSSKDMLDYLREILQAFSLKWDELILKRSCDQLLDPSTFVELKELTRQLSGGTILHDCITETFMQVYQNCGFPPHVSTKNPNVQAYVVKKLLVKEITEVVNMHFHTHPSTLTLEQLVEKDLTRRGSWLNIQVDTEDIALEVEKDVLEKLVLEIASEMDIINMTYCNENEPVSTCSGDDKALWKDYLATIF 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3065 809 Pfam Protein of unknown function (DUF3741) 107 150 IPR022212 -
Ssu5g3065 809 PANTHER DUF3741 FAMILY PROTEIN 98 776 - -
Ssu5g3065 809 PANTHER DUF3741 FAMILY PROTEIN 4 97 - -
Ssu5g3065 809 Pfam Domain of unknown function (DUF4378) 626 771 IPR025486 -
Ssu5g3065 809 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 98 776 - -
Ssu5g3065 809 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 4 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3065 Ssu-Chr5 78165638 78170008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3065 368 760 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 25.362 1.50e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3065 - - gmx:100813885 1188.71