Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3063 ATGGTGCCGGAGAATTTGACGAAGCAACTTGCTTTGGCCGTGAGAAGCATCCATTGGAGCTATGCAATCTTCTGGACTGATTCAACTACCCAACCCGGGGTGTTGAGTTGGGGGGAAGGGTATTACAATGGAGACATTAAGACTAGGAAAACAAGTCAAGGGGTAGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAGTCCCTCAAAACTGCAGAAATCAACCCACAAACCAAAAGGCCTTCAGTAGCACTGTCCCCAGAAGATCTCACGGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATAGGCCAAGGGTTACCAGGAAGAGCTCTAGCGAAGGGCCAACCCGTTTGGCTGAACAATGCCCATTCCGCTGATTGTAAAGTTTTTAGTCGTTCTCTGCTGGCAAAGAGTGCATCCATTGAGACGGTTGTGTGCTTTCCGTTTATGGAAGGGGTTATTGAGCTAGGTACTACTGAACAGGTCTCAGAAGATTTGAGTCTCATTCAACAGATCAAAACTTCTTTCTTGAATAGTCTGCATGACAATGTTCCTAATAAGTCAGGAGCTACATTGAAATCAAGGAACGAGGAAGATCTTGCTTATCTAGCATTTGATCATAATGCTAACAATGTTGAATCAATTCCAGAAGTTGGGTATGACATAGCCAACACAACCTCTCCTAATGGTAGTTCAAATGCATTCCAAGCCATTCAACCACTTGATGAAACATTCATGGTTGAAAGGATAACCAGCGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATGGATGATGAATTGAGCAACTGTGTCCATAACTCTATGAATTCCAGTGACTGTATATCACAAACTTTTGCCAGCCCTGAGAATATTGCTTCTGCCCCCAAGTGTAATAACCTTTCTGACCCTTGTGCCCGAGATCTTCAAAAGGGCAACAACCCAAAAATGACCTTAGTGGATCCTCGAAGTGATGATTTGCATTATCAGAGAGTTCTTTCTGCCCTTTTAAAAAGCTCTGATCAGTTACTTATGGGGATGCATGTGCAAAAATTTCATCAGGAATCCAGCTTTGTTAGTTGGAGGAAAGGAGGGCCAATGGGTAGCCAATGGCCAAGAGCAGGAACCtcacaaaagttattgaagaagGTCTTGTTTGAAGTTCCTCAAATGCACTTGGATGGGCTGCATGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAATGAGACTAGAGACTGATGAAATTGGCATGAACCATGTTTTGTcagaaagaaggagaagagcAAAACTAAATGATAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTAGATGATGCAATTGAGTACCTTAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGCTCTCAGGGGGGTAACAGATATAGAGAGTGGGACTAGAAGATCACCTCAAGATATGGTGGAGAGGACTTCTGATCAttattttagcaaaaataataatggcaAGAAACCAGTGGTCAAAAAGAGGAAGGCTAGTGGTGTAGATGACACAGGAAGAGAGATTAATTCACATGCTTTAACAGGCAGTTATGCTAATGATGTTACTGTCAGTACTAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCTCAAGAGCAGGAAGGCTGATGGAAATTATGGAAGCAATAAACAGTTtcaatatagattttaattcaGTTCAGTCAACAGAAGCTGATGGAAATCTTTATGTGACCATTAAATCTAAGTTCACAGGAGCAACTATTGCAACAGCCAAAAGAATCAAACACACACTCCAAAAAGTGGCTTCCAAGTGTTGA 1890 0.4053 MVPENLTKQLALAVRSIHWSYAIFWTDSTTQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTAEINPQTKRPSVALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRALAKGQPVWLNNAHSADCKVFSRSLLAKSASIETVVCFPFMEGVIELGTTEQVSEDLSLIQQIKTSFLNSLHDNVPNKSGATLKSRNEEDLAYLAFDHNANNVESIPEVGYDIANTTSPNGSSNAFQAIQPLDETFMVERITSGTSQVQSWQVMDDELSNCVHNSMNSSDCISQTFASPENIASAPKCNNLSDPCARDLQKGNNPKMTLVDPRSDDLHYQRVLSALLKSSDQLLMGMHVQKFHQESSFVSWRKGGPMGSQWPRAGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRLETDEIGMNHVLSERRRRAKLNDRFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEALRGVTDIESGTRRSPQDMVERTSDHYFSKNNNGKKPVVKKRKASGVDDTGREINSHALTGSYANDVTVSTSDNEIVIEMKCPSRAGRLMEIMEAINSFNIDFNSVQSTEADGNLYVTIKSKFTGATIATAKRIKHTLQKVASKC 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3063 629 MobiDBLite consensus disorder prediction 494 521 - -
Ssu5g3063 629 Pfam Helix-loop-helix DNA-binding domain 431 477 IPR011598 GO:0046983
Ssu5g3063 629 PANTHER TRANSCRIPTION FACTOR EGL1 3 625 - -
Ssu5g3063 629 PANTHER TRANSCRIPTION FACTOR TT8 3 625 - -
Ssu5g3063 629 MobiDBLite consensus disorder prediction 498 513 - -
Ssu5g3063 629 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 429 489 IPR036638 GO:0046983
Ssu5g3063 629 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 189 IPR025610 -
Ssu5g3063 629 SMART finulus 433 482 IPR011598 GO:0046983
Ssu5g3063 629 Gene3D - 425 488 IPR036638 GO:0046983
Ssu5g3063 629 Coils Coil 466 493 - -
Ssu5g3063 629 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 427 476 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3063 Ssu-Chr5 78122242 78125552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3063 2 629 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.659 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g3063 bHLH-MYC_N 3.5e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3063 - - gmx:100808167 1093.57