Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3060 ATGTCTGGATGCAATAAATCACCTAAAAATGATCAACAATCAATCAAATATTGGCGGATTCAACATGGAGGGGCATCCTTTGAGGCTGATCTTTCTTGTATAGATTATTCACCTTCTCTTCCCAACAATAAGAATAAGCAATGCTACAGAAGTTCTCAACCAAAGCCCCCTCGGATACTGAGCACAGCTCAGCTCATCTCAGCAATAGGCCAGATATGGGATTCTGCAAGTCGCCCGCTTTCAGTTTTACTGCCGAAGGAAAATGTGAATCAGGATGATAAAGGATTGCCTAAAGAGAAAATTCTGGGTAGtgttgatgagaaaaaaaatgaactggTATATACTTCAAGTGACACTAAACACCATCCTGTTACCTGGGGTGGTGCACAGATTGTGCAGAAAAAAATGGATTTCCCTAAGGTAATGCAGAAGATATTAATACTTGAATCTTCTAATGGAAGTCAAGATTATATTCAGTCTGTATTCCAGAGGTTTTTGCAGGCTAgtgataaaaatacaaataaagattGGAGAGAAGTGGAACTTGGGAAGGAGGAAATGTCATGTAAATCAGGAAATGTATATTATTGGGTAGGTAGGAATGCTACTAAGATGCTAAATTGTCAGGTGAATGTAACCCAGCCTGAGAACCTGGAAACTAATTCTCCAGTTGATGGGGGTGGCATTTCAATAGATACAAGCACCCCTGCATTGTTTATGAGTGATGTGTGTGGTCCTGATTCAATCACACATGAAACTCAATCATTATCTAATGATGCAATGCTGAACACAAGAAAAGTTAGCCCTCTGTGTTCAGACTATTTTCTTCAAGCTGTGTCCAATACTAAGGCAGATGTTGGTGCTTGTCAGACCCTTTCTTCTAGTATCTGTGCAGATTATCATATTAACTCTTTAGCTTCCTGTAATAGTGCTTCTGATCAGTGCCAACATGAGATTGATGATAATGAATCACTGGAAATCCAAAGAAGACATTTCTTGGATATAACTGATGATGAACCTAAGATTCAGACCTTCTCTGCAACCCATCTGAAGCCTTGTAATTCCCAAGCCAAGCAAGAACATGCTTTTTCTGGGGCGTTAGCTGGTATGTGTGTCAGCCTTTGTCTGCATCCTGTTGACACAATTAAGACAGTCATTCAATCATGCCGTGCTGAACACAGGTCCATCTTTTACATTGGGAAGTCAATTGTTTCTGACAGAGGTTTGCTTGGACTATATCGCGGAATTGCCACAAACATTGCATGTTCAGCTCCAATTTCTGCAGTTTATACTTTCTCCTATGAATCAGTTAAAGCAGCTTTGCTTCCATATCTTCCAAAGGAGTATTATTCTTTTGCCCATTGCATGGGAGGCGGTTGTGCAAGCATTGCCACCTCTTTCATTTTTACTCCAAGTGAGCGAATAAAGCAGCAGATGCAAGTTGGTTCTCATTATCGTAACTGCTGGGATGTATTGGTTGGAATTATCAGAAATGGTGGTTTTTCTTCCCTGTATGCAGGTTGGAGAGCAGTACTGTGCCGGAATGTTCCACATTCAATTATCAAGTTTTACACATATGAAAGCTTGAAGCAAGTGATGCCATCTTTGCCATCTAGTATTCAACCCAACACGTTTCAGACTTTAGTGTGTGGAGGATTAGCTGGATCTACTGCTGCTTTATTCACAACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGATTCCTGGATCTGCAAATCAATATGATAGCGTGCTTCATGCCCTTTACAAAATTAGTAAGAGTGAAGGTTTGAAGGGCCTTTACAGGGGGTTGACTCCGAGGTTGATTATGTACATGTCTCAAGGATCACTATTCTTTGCTTCATATGAATTTTTCAAGAGGGCATTTTCTCTGTAA 1902 0.3948 MSGCNKSPKNDQQSIKYWRIQHGGASFEADLSCIDYSPSLPNNKNKQCYRSSQPKPPRILSTAQLISAIGQIWDSASRPLSVLLPKENVNQDDKGLPKEKILGSVDEKKNELVYTSSDTKHHPVTWGGAQIVQKKMDFPKVMQKILILESSNGSQDYIQSVFQRFLQASDKNTNKDWREVELGKEEMSCKSGNVYYWVGRNATKMLNCQVNVTQPENLETNSPVDGGGISIDTSTPALFMSDVCGPDSITHETQSLSNDAMLNTRKVSPLCSDYFLQAVSNTKADVGACQTLSSSICADYHINSLASCNSASDQCQHEIDDNESLEIQRRHFLDITDDEPKIQTFSATHLKPCNSQAKQEHAFSGALAGMCVSLCLHPVDTIKTVIQSCRAEHRSIFYIGKSIVSDRGLLGLYRGIATNIACSAPISAVYTFSYESVKAALLPYLPKEYYSFAHCMGGGCASIATSFIFTPSERIKQQMQVGSHYRNCWDVLVGIIRNGGFSSLYAGWRAVLCRNVPHSIIKFYTYESLKQVMPSLPSSIQPNTFQTLVCGGLAGSTAALFTTPFDVIKTRLQTQIPGSANQYDSVLHALYKISKSEGLKGLYRGLTPRLIMYMSQGSLFFASYEFFKRAFSL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3060 633 ProSiteProfiles Solute carrier (Solcar) repeat profile. 449 532 IPR018108 -
Ssu5g3060 633 ProSiteProfiles Solute carrier (Solcar) repeat profile. 356 440 IPR018108 -
Ssu5g3060 633 Pfam Mitochondrial carrier protein 543 631 IPR018108 -
Ssu5g3060 633 Pfam Mitochondrial carrier protein 450 533 IPR018108 -
Ssu5g3060 633 Pfam Mitochondrial carrier protein 360 441 IPR018108 -
Ssu5g3060 633 Gene3D Mitochondrial carrier domain 449 632 IPR023395 -
Ssu5g3060 633 Gene3D Mitochondrial carrier domain 328 448 IPR023395 -
Ssu5g3060 633 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 633 - -
Ssu5g3060 633 ProSiteProfiles Solute carrier (Solcar) repeat profile. 542 630 IPR018108 -
Ssu5g3060 633 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 633 - -
Ssu5g3060 633 SUPERFAMILY Mitochondrial carrier 360 627 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3060 Ssu-Chr5 78060135 78063535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3060 364 631 Chloroplast and Mitochondria Gene Families AT1G07030 33.213 1.29e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3060 - - gmx:100812271 1093.95