Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3053 ATGCTTATTAAGCAAAAGGGGCTTTGGGGTAAATTTGGAAGTGTCTTGACTAACTGGAATTTGCCGATGAGTTACAGTGTTGGGATGGGTTGTGGCATTTCTAAGTGCACAGCATGCTGCATGGATACTGAGCAAGATGGTCCAGCTTCTCAAGCTCAGGTTGAAGaaAACGAAGAGAATGTTGTTGAGGCCATTGACTTGCCGCGGTTTCATGAATTCACAATTGATCAGCTTAGGAGGGCTACGTCCGGATTTGCCGTTGAAAATATAGTTTCTGAGCATGGAGAAAAGGCTCCAAACGTGGTCTATAAAGGGAGACTTGATAATCAGATGCGAATTGCTGTCAAACGATTCAACAGAAATGCCTGGCCTGATGCGCAGCCATTTTTGGAGGAGGCCAGGGCTGTTGGTCAGCTAAGGAACCAAAGATTGGTAAATCTGCTTGGATGCTGCTGTGAAGGTGATGAGAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGGCAAAGCATTTATTCCATTGGGAAAATCAGCCCATGAAATGGGCAATGCGAATGAGAGTTGCTCTATTCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTAAATGCTTACAGAGTTCTTTATGATTCTGACTGCAATCCTAGACTTTCTTGCTTCGGTCTGATGAAAAATAGTCGAGATGGGAAAAGTTATAGTACGAATTTGGCGTTTACTCCACCTGAATATCTGAGGACAGGCAGAGTCACTCCAGAGAGTGTAACTTATAGCTTTGGTACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCTAGTCATGCCCTTGACCTGATTAGAGACAAAAACCTTCAAATGCTATCAGACTCTTGTTTAGAAGGAGAGCTTTCAAATGATGATGGAACTGAATTAGTGCGTCTAGCCTCACGATGCTTGCAATCTGAACCACGAGAGCGTCCTAATCCAAAGTCACTGGTAGCTGCTCTAATACCTCTACAGAAGGATTCTGAGgttCCTTCTCATGTGCTGATGGGTATACCAGATGGTACAGCTGCTTTTCCCCTTTCACCTCTTGCAGAAGCTTGTCTACGAATGGATCTGACTGCCCTTCATGAGGTGATGGAGAAAATTGGGTATAAAGATGATGAGGGCGCAGCAACTGAGCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCACAAGGATTTTACAACTGCAATCGATAGCTATACGATGTTCATTGATGTTGGAACCATGGTTTCTCCAACAGTTTATGCACGTCGTAGTCTATCTTATCTGATGAGCAATATGCCCGATGAAGCACTTAATGATGCAATGCAAGCACAAATAATATGCCCTGTTTGGTACATTGCGTTTTATTTACAAGCTGTTGCTCTTTTAGCACAGGCCAAGGAGAGCGAGGCCCAAGTGGCACTTAAAGAGGGTTCTTCGCTTGAAACAAAAAAGGCAACTTAG 1548 0.4367 MLIKQKGLWGKFGSVLTNWNLPMSYSVGMGCGISKCTACCMDTEQDGPASQAQVEENEENVVEAIDLPRFHEFTIDQLRRATSGFAVENIVSEHGEKAPNVVYKGRLDNQMRIAVKRFNRNAWPDAQPFLEEARAVGQLRNQRLVNLLGCCCEGDERLLVAEYMPNDTLAKHLFHWENQPMKWAMRMRVALFLAQALEYCTSKGRALYHDLNAYRVLYDSDCNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQMLSDSCLEGELSNDDGTELVRLASRCLQSEPRERPNPKSLVAALIPLQKDSEVPSHVLMGIPDGTAAFPLSPLAEACLRMDLTALHEVMEKIGYKDDEGAATELSFQMWTNQMQETLNSKKKGDAAFRHKDFTTAIDSYTMFIDVGTMVSPTVYARRSLSYLMSNMPDEALNDAMQAQIICPVWYIAFYLQAVALLAQAKESEAQVALKEGSSLETKKAT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3053 515 Pfam Protein tyrosine and serine/threonine kinase 101 338 IPR001245 GO:0004672|GO:0006468
Ssu5g3053 515 Gene3D Tetratricopeptide repeat domain 409 515 IPR011990 GO:0005515
Ssu5g3053 515 Gene3D Phosphorylase Kinase; domain 1 59 163 - -
Ssu5g3053 515 ProSiteProfiles Protein kinase domain profile. 88 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3053 515 SUPERFAMILY Protein kinase-like (PK-like) 68 348 IPR011009 -
Ssu5g3053 515 PANTHER TPR DOMAIN KINASE 29 515 - -
Ssu5g3053 515 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Ssu5g3053 515 Gene3D Transferase(Phosphotransferase) domain 1 165 356 - -
Ssu5g3053 515 SUPERFAMILY TPR-like 415 510 IPR011990 GO:0005515
Ssu5g3053 515 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 29 515 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3053 Ssu-Chr5 77963723 77974138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3053 43 364 Glycoside Hydrolase AT3G07070 31.429 4.75e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Ssu5g3053 PK_Tyr_Ser-Thr 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3053 K14500 - gmx:100797107 900.197