Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3051 ATGGATGGGAGAGAAGCTATGGCATTTTCTGGTGGCTCAGCTTCATATTACATGCATAGAGGAGGGGTTATTGGAGGGTCTGGCTCTGGAACACAGAGTGGGGGAGGGGGGTTCCAAGCAGCCCCTGGGTTCAGACCTTTATCAAACACTGGCATTCAAGCTGAGTCAAATGCAAGGGGTCAGGGGGGTGGTTCTGTAGGGTCTAGTTCCACATTTTCAGTGGAGGCTCCTCAGGCTCGTGCCAATTTTAACCATGGCATTGGCATTGGGGCACCTTCAAGTGAGCctgtgaagaagaaaagagggaGGCCCCGTAAATATGGTCCTGATGGACCAGTTTCTTTGAGACTGTATCCAATGTCTGCCCCTGCTAACTCCACCCAGGGTGCAAGTGAAACCACCCCTTCTCAGAAAAAGGGTAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAGCTAGCCGCTTTAGGTGAATGGATGAATAGTTCAGCAGGGTTGGCCTTTTTGCCTCATGTTGTCACTATTGGAGTTGGGGAGGACATTGTGGCAAAGTTATTGTCGTTATCACAGCAGAGACCAAGGGCTCTGTGCATTTTGTCAGGCACTGGGACAGTTTCCTCCGTCACTCTGCGGCAGCCTGCTTCTACCAATGCCAGTGTAACTTATGAGgGACGATTCCAAATATTATGCTTGTCTGGTTCTTACCTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGCCCTGATGGTCATGTTATTGGTGGCAGTGTTGCTGTGCTTATTGCTGGAAGCCCAGTGCAGGTGGTATTGTGCAGTTTTGTGTATGGTGGGTCAAAGACCAAGTCTAAACAAGGGACCACTATCAAAGTTGAAAGTTCTGAGCTGCCTCAGCGTAACGATAAGTTAGCTTCTCCAGCCAGTGCTCCTGCTCCACCTGCTCAAAATCAAAACTACCTCCCTTCTGCAACAAACATTTGGCCTGGATCACGGCCAGCAGAGTTGAAGAGCGTGCACACGCATACTGGCATTGATTTGACTCGGGGGTGA 1074 0.4926 MDGREAMAFSGGSASYYMHRGGVIGGSGSGTQSGGGGFQAAPGFRPLSNTGIQAESNARGQGGGSVGSSSTFSVEAPQARANFNHGIGIGAPSSEPVKKKRGRPRKYGPDGPVSLRLYPMSAPANSTQGASETTPSQKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFLPHVVTIGVGEDIVAKLLSLSQQRPRALCILSGTGTVSSVTLRQPASTNASVTYEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGSVAVLIAGSPVQVVLCSFVYGGSKTKSKQGTTIKVESSELPQRNDKLASPASAPAPPAQNQNYLPSATNIWPGSRPAELKSVHTHTGIDLTRG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3051 357 MobiDBLite consensus disorder prediction 49 78 - -
Ssu5g3051 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 357 IPR039605 GO:0003680
Ssu5g3051 357 CDD DUF296 170 282 IPR005175 -
Ssu5g3051 357 Gene3D - 170 302 - -
Ssu5g3051 357 ProSiteProfiles PPC domain profile profile. 162 303 IPR005175 -
Ssu5g3051 357 MobiDBLite consensus disorder prediction 288 357 - -
Ssu5g3051 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 169 285 - -
Ssu5g3051 357 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 357 - -
Ssu5g3051 357 MobiDBLite consensus disorder prediction 25 152 - -
Ssu5g3051 357 MobiDBLite consensus disorder prediction 120 140 - -
Ssu5g3051 357 MobiDBLite consensus disorder prediction 318 333 - -
Ssu5g3051 357 MobiDBLite consensus disorder prediction 288 309 - -
Ssu5g3051 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 283 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3051 Ssu-Chr5 77930303 77933697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3051 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.096 1.12e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3051 - - gmx:100813888 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2863 2 89724630 89728173 Ssu5g3051 5 77930303 77933697 PCT