Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3046 ATggccaccaaaattttagcgTTAGCTTGCTTACGCAGTGAGGGGTCGGGGCACCTATCGCCGCGACCTCACTACCCGTCTATGCCGAGATACCCGAAAGGCGTGACGGTAGAAGAAGGGACCACCAATATACCATCCAAAGCACTTTTCTCCGTCACCGGAATGACTTGCTCCGCCTGCGCTGCCTCCGTCGAGAAAGCCGTCAAGCGCCTTCCCGGGATTCGCCAAGCCGTCCTTGATGTTCTCAACAACCGTGCCCAAGTCCTCTTCTACCCATCCTTTGTTAACGAAGAAACCATTCGCGAGGCCATTGAAGATGCTGGATTCGAAGCCACATTAGTAAGAGATGATTCGAATAATGAGACATCTGTTCAGGTATGCCGCATACGAATCCAGGGCATGACATGCACGTCGTGTTCCTCCACCGTTGAATCCGCTCTACAATCAATCCAAGGAGTGGTGAAGGCTCAAGTGGCTCTTGCAACCGAGGAAGCTGAAGTTCACTACACCCCAAACGTTGTTACCTACAACCAAATCTTGGAAGCTGTAGAAGACACGGGTTTTGAAGCCACGCTTATCAGCACAGGCGAAGACATGAGCAGAATAGACCTTCAAGTTGAAGGAATAAGGACTCATCGTTCCATGAGACTCATTGAAAATTCTCTTCAGGCCCTCCCCGGGGTCCAAGGTGTAGAAACACACCCTGAGTTGAACAAAGTGTCTCTTTCTTATAAACCGCACTTGACAGGACCCAGAAACTTCATTAACGTGATTGAAGAAACCGGGTCTAGGCGTTTCAAGGCAAAGATTTTCCCtgaagaaggaggaagaaggaaTAGTCATAGGAGGGAGGAAATCAAGCAATACTACAGATCCTTCTTGTGGAGTTTGGTGTTTACTATTCCTGTGTTTCTAACCTCTATGGTGCTTATGTATATCCCTGGAATTAAGCATGGACTAGATGCCAAAGTTGTGAACATGCTTACAGTGGGGGAGATTGTACGATGGGTGCTTGCCACACCAGTGCAGTTCATTATAGGCAAGAGGTTTTACTCTGGTGCTTACAAGGCGTTACGCCTTGGATCTCCCAACATGGATGTTTTGATTGCCTTGGGGACAAATGCAGCATACTTTTACTCAGTGTATTCTGTGCTGAGAGCTGCTACATCTCAGGGTTTCAAGGGTACTGACTTCTTTGAGACTAGTGCTATGCTCATTTCGTTTATTTTGCTAGGGAAGTACCTTGAGGTTTTGGCCAAGGGGAAGACATCCAATGCAATTGCCAAGCTCATGAACTTGACACCTGACACTGCTATATTGTTGACCCTGGACAGTGAAGGAAATGTTGTTGGTGAGGAGGAAATTGATAGCAGATTGATTCAGAAGAATGATGTGATTAAAATTATTCCTGGTGCAAAAGTGGCTTCGGATGGATTTGTTATTTGGGGTCAGAGCCACGTGAATGAGAGCATGATAACAGGCGAGGCACGTCCTGTGGCAAAGAGGAAAGGTGACACTGTTATTGGAGGAACAGTGAATGAGAATGGAGTGTTGCATGTTAAGGCTACATGGGTTGGATCAGAGAGTGCTCTTTCTCAGATTGTTCGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAATTAGCTGACCGCATTTCCAAATACTTTGTGCCTCTGgtaGTTATTTTAATCTCATTTTCAACTTGGCTTGCCTGGTTTTTAGCTGGAAGATTTCATTCTTACCCCAAATCTTGGATACCATCTTCCATGGATAGCTTTCAACTTGCTTTGCAGTTTGGGATTTCTGTCATGGTCATAGCCTGTCCATGTGCTTTAGGTTTAGCAACACCAACTGCTGTTATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATGCACATAAGGTGAACTGCGTTGTATTTGACAAGACAGGTACTCTCACTATCGGGAAGCCCGTGGTAGTAAATACAAAGTTGTTGACAAATATGGTACTCCGGGAATTCTACGAACTTGTGGCTGCAGTTGAGGTAGTGAATAGTGAGCATCCACTGGCTAAGGCCATTGTTGAGTATGCTAAAAAACTGAGAGATGAAGAGAACCCCACTTGGGCAGAGGCACGGGATTTTGTGTCCATTGCTGGACATGGAGTTAAGGCAATAGTTAGAAACAAGGAAATACTTGTGGGTAACAAGACCTTGTTGGCGGACCACAATGTTGCACTTCCTGTTGATGCTGAAGACATACTTGCAGAAGCAGAAGCAATGGCTCAAACTGGAATTATAGTGTCTATAAATAGGGAAGTAGTTGGGGTTTTAGCAGTATCTGATCCATTGAAACCAGCTGCACAAGAAGTCATTTCCTTTCTCAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGGGACAATTGGGGTACTGCCAATTCTATAGCAAGGGAAGTTGGAATTGAAACTGTTATTGCTGAGGCCAAACCAGAGCAGAAGGCAGAGCGAGTGAAGGACTTGCAgGCTTCTGGGAACAGGGTGGCTATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCTATAGGTGCTGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTGATGAAGAGCAACTTGGAGGATGTCATAACTGCAATTGATCTTTCCAGAAAAACGTTTTCCCGTATCCGCCTCAACTACATGTGGGCTTTGGGCTATAATCTGCTTGGCATTCCAATTGCTGCTGGAGCTCTTTTTCCTTCTATACGATTTCGGTTGCCACCATGGGTTGCTGGGGCTGCCATGGCTGCATCTTCTGTCAGTGTTGTTTGCTGTTCCCTACTGTTGAAATATTATAGGAGACCCAAGAAGCTGGACAACTTGAGATACGGGGCATAA 2952 0.4533 MATKILALACLRSEGSGHLSPRPHYPSMPRYPKGVTVEEGTTNIPSKALFSVTGMTCSACAASVEKAVKRLPGIRQAVLDVLNNRAQVLFYPSFVNEETIREAIEDAGFEATLVRDDSNNETSVQVCRIRIQGMTCTSCSSTVESALQSIQGVVKAQVALATEEAEVHYTPNVVTYNQILEAVEDTGFEATLISTGEDMSRIDLQVEGIRTHRSMRLIENSLQALPGVQGVETHPELNKVSLSYKPHLTGPRNFINVIEETGSRRFKAKIFPEEGGRRNSHRREEIKQYYRSFLWSLVFTIPVFLTSMVLMYIPGIKHGLDAKVVNMLTVGEIVRWVLATPVQFIIGKRFYSGAYKALRLGSPNMDVLIALGTNAAYFYSVYSVLRAATSQGFKGTDFFETSAMLISFILLGKYLEVLAKGKTSNAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHVKATWVGSESALSQIVRLVESAQMAKAPVQKLADRISKYFVPLVVILISFSTWLAWFLAGRFHSYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENAHKVNCVVFDKTGTLTIGKPVVVNTKLLTNMVLREFYELVAAVEVVNSEHPLAKAIVEYAKKLRDEENPTWAEARDFVSIAGHGVKAIVRNKEILVGNKTLLADHNVALPVDAEDILAEAEAMAQTGIIVSINREVVGVLAVSDPLKPAAQEVISFLKSMKIRSIMVTGDNWGTANSIAREVGIETVIAEAKPEQKAERVKDLQASGNRVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYMWALGYNLLGIPIAAGALFPSIRFRLPPWVAGAAMAASSVSVVCCSLLLKYYRRPKKLDNLRYGA 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3046 983 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Ssu5g3046 983 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Ssu5g3046 983 CDD HMA 129 191 IPR006121 GO:0046872
Ssu5g3046 983 SUPERFAMILY HMA, heavy metal-associated domain 47 117 IPR036163 GO:0046872
Ssu5g3046 983 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Ssu5g3046 983 SUPERFAMILY HAD-like 652 964 IPR036412 -
Ssu5g3046 983 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Ssu5g3046 983 PRINTS P-type cation-transporting ATPase superfamily signature 653 667 - -
Ssu5g3046 983 PRINTS P-type cation-transporting ATPase superfamily signature 858 877 - -
Ssu5g3046 983 PRINTS P-type cation-transporting ATPase superfamily signature 881 893 - -
Ssu5g3046 983 PRINTS P-type cation-transporting ATPase superfamily signature 805 815 - -
Ssu5g3046 983 PRINTS P-type cation-transporting ATPase superfamily signature 783 794 - -
Ssu5g3046 983 SUPERFAMILY Calcium ATPase, transmembrane domain M 397 946 IPR023298 -
Ssu5g3046 983 Gene3D - 200 262 - -
Ssu5g3046 983 SFLD p-type atpase 635 910 IPR044492 -
Ssu5g3046 983 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Ssu5g3046 983 SUPERFAMILY HMA, heavy metal-associated domain 196 263 IPR036163 GO:0046872
Ssu5g3046 983 Gene3D - 420 542 - -
Ssu5g3046 983 CDD P-type_ATPase_Cu-like 291 968 - -
Ssu5g3046 983 ProSiteProfiles Heavy-metal-associated domain profile. 201 262 IPR006121 GO:0046872
Ssu5g3046 983 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 977 - -
Ssu5g3046 983 Pfam haloacid dehalogenase-like hydrolase 649 872 - -
Ssu5g3046 983 Gene3D - 620 915 IPR023214 -
Ssu5g3046 983 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Ssu5g3046 983 PANTHER ATP7, ISOFORM B 1 977 - -
Ssu5g3046 983 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 365 967 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu5g3046 983 TIGRFAM TIGR00003: copper ion binding protein 129 190 IPR006122 GO:0005507
Ssu5g3046 983 TIGRFAM TIGR00003: copper ion binding protein 49 111 IPR006122 GO:0005507
Ssu5g3046 983 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 405 938 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g3046 983 SUPERFAMILY Calcium ATPase, transduction domain A 452 538 IPR008250 -
Ssu5g3046 983 PRINTS H+-transporting ATPase (proton pump) signature 889 914 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g3046 983 PRINTS H+-transporting ATPase (proton pump) signature 858 874 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu5g3046 983 Pfam E1-E2 ATPase 451 631 - -
Ssu5g3046 983 Gene3D - 739 789 IPR023299 GO:0000166
Ssu5g3046 983 Gene3D - 660 738 IPR023299 GO:0000166
Ssu5g3046 983 SUPERFAMILY HMA, heavy metal-associated domain 123 196 IPR036163 GO:0046872
Ssu5g3046 983 Gene3D - 125 197 - -
Ssu5g3046 983 Gene3D - 45 117 - -
Ssu5g3046 983 CDD HMA 50 112 IPR006121 GO:0046872
Ssu5g3046 983 ProSitePatterns E1-E2 ATPases phosphorylation site. 655 661 IPR018303 -
Ssu5g3046 983 SFLD Haloacid Dehalogenase 635 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3046 Ssu-Chr5 77890047 77897315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3046 1 979 Primary Pumps ATPases AT1G63440 76.417 0.0 1523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3046 K17686 - gmx:100810141 1786.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2857 2 89681546 89687929 Ssu5g3046 5 77890047 77897315 PCT