Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3041 atgaagttatgTACTTCATTGTTGTTACTTGGTTTGGTTTCCACGCTCTCTTTTGTGGCTTCTGTCATGGTGCCTTCAAATGAAGTTTGGGCACTTAGAACTTTCAAAGAAGCTGTGTATGAAGATCCACACATGGTTTTGTCCAATTGGAATACTCTGGACTCAGATCCTTGCGACTGGAATGGTGTTTCTTGCACTGCAACTCGAGATCATGCCATCAAGCTTAACATATCAGGGGCTTCATTAAGGGGGTTTCTTGCTCCAGAATTTGGGACAATCACCTACTTACAAGAACTGATCTTGCATGGCAACAGTCTCATTGGAATAATACCTAAAGAATTGGGCATGTTGAAATCTCTTAAGGTGTTGGATTTGGGAATGAATCAGTTATCAGGACCAATTCCTCCGGAGATTGGAAATTTGACCCAAGTTATGAAAATAAACCTGCAGTCCAATGGGTTGACTGGTAAGCTACCTCCAGAGCTAGGAAATTTGAAATACCTTCAAGAGCTTCGGCTGGATAGGAATAAGCTTCAAGGATCTCTTCCTGGTGGTGGCAGttcaaatttttcttcaaatatgcATGggatGTATGCCTCAGGTGTGAATTTAACTGGCTTCTGTCGTTCGTCTCAGTTGAAAGTTGCAGATTTttcatataacttttttgttgGTAGCATACCCAAATGTTTGGGGTATCTTCCAAGATCAAGCTTTCAAGGAAATTGTCTCCATATCAAAGGCATAAAACAGAGGACTTCAGCGCAATGTGCTGGTGCTTCACCTGTCCAAAGTGGTCCAGTAGTGAACCCAAAGAACCAACCTGCTACTAAACATGAGTCCAAGCATCAAGGAGCATCAAAACCTGCTTGGCTTTTGGCTCTGGAAATAGTGACAGGAACCATGGTTggttctctctttcttattgcTATTCTCACCGCTTTTCAGAGGTGTAACAACAAATCATCTATCATTATTCCTTGGAAAAAATCTGCAAGCGAAAAAGATCATATGGCAGTACATATAGACTCTGAGATGTTGAAGGATGTGATGAGCTATAGCAGACAGGACCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTCTACAAGGGTACAATGAAAGGTGGGCCTGAGATTGCTGTAATTTCTCTATGCATCAAGGAAGAGAATTGGACAGGATACCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGATAACACAGGAAAGCTGCTAGGATATTGTAGAGATAGCAGTCCATTTACAAGGATGCTGGTTTTTGATTATGCATCAAATGGGACACTTTATGAGCACCTACATTGTTATGGAGAAGGGTGCCAGTTGTCTTGGACACGTCGTATGAAAATTATCATAGGCATTGCACGTGGACTCAAGTATTTGCACACTGAGATTGAGCCTCCATTCACTATCTCAGAATTGAATTCCAACGCCGTTTACCTTACAGAAGATTTTTCCCCTAAGCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAAAATTCTGGTTCAGTCAGCAGCCAGGGAGCTGTTTGTGTTCTACCAAGCTCCCTTGAAGCACGCCATCTCAACATCAAAGGAAACATTTATGCTTTTGCAGTACTTCTACTGGAGATAATCAGTGGAAGACCTCCATACTGCAAGGACAAAGGGTACTTGGTGGATTGGGCTAGGGACTATCTTGAAATGCCAGAAGTAATGTCATATGTGGTAGATCCTGAGTTGAAACATTTTAGATATGAGGACCTCAAAGTAATATGTGAGGTGATAACCCTTTGTATCAGTCCTGATCCCTCTGCCCGTCCATCAATGCTTGAATTGTGCACTATGTTGGAGAGCAAAATAGACACATCACTAAGTGTGGAGCTAAAGGCATCATCGTTGGCTTGGGCTGAATTGGCACTTTCATCATAA 1989 0.4077 MKLCTSLLLLGLVSTLSFVASVMVPSNEVWALRTFKEAVYEDPHMVLSNWNTLDSDPCDWNGVSCTATRDHAIKLNISGASLRGFLAPEFGTITYLQELILHGNSLIGIIPKELGMLKSLKVLDLGMNQLSGPIPPEIGNLTQVMKINLQSNGLTGKLPPELGNLKYLQELRLDRNKLQGSLPGGGSSNFSSNMHGMYASGVNLTGFCRSSQLKVADFSYNFFVGSIPKCLGYLPRSSFQGNCLHIKGIKQRTSAQCAGASPVQSGPVVNPKNQPATKHESKHQGASKPAWLLALEIVTGTMVGSLFLIAILTAFQRCNNKSSIIIPWKKSASEKDHMAVHIDSEMLKDVMSYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTGYLELYFQREVADLARLNHDNTGKLLGYCRDSSPFTRMLVFDYASNGTLYEHLHCYGEGCQLSWTRRMKIIIGIARGLKYLHTEIEPPFTISELNSNAVYLTEDFSPKLVDFESWKTILERSEKNSGSVSSQGAVCVLPSSLEARHLNIKGNIYAFAVLLLEIISGRPPYCKDKGYLVDWARDYLEMPEVMSYVVDPELKHFRYEDLKVICEVITLCISPDPSARPSMLELCTMLESKIDTSLSVELKASSLAWAELALSS 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3041 662 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 662 - -
Ssu5g3041 662 Gene3D Ribonuclease Inhibitor 25 254 IPR032675 -
Ssu5g3041 662 SUPERFAMILY L domain-like 27 235 - -
Ssu5g3041 662 MobiDBLite consensus disorder prediction 259 283 - -
Ssu5g3041 662 SUPERFAMILY Protein kinase-like (PK-like) 342 637 IPR011009 -
Ssu5g3041 662 ProSiteProfiles Protein kinase domain profile. 363 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g3041 662 MobiDBLite consensus disorder prediction 259 275 - -
Ssu5g3041 662 Gene3D Phosphorylase Kinase; domain 1 335 444 - -
Ssu5g3041 662 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Ssu5g3041 662 Pfam Protein tyrosine and serine/threonine kinase 367 635 IPR001245 GO:0004672|GO:0006468
Ssu5g3041 662 Gene3D Transferase(Phosphotransferase) domain 1 445 651 - -
Ssu5g3041 662 PANTHER PROTEIN MALE DISCOVERER 2 7 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3041 Ssu-Chr5 77853495 77857682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3041 1 642 Receptor kinase-like Gene Family AT2G35620 28.702 2.00e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Ssu5g3041 PK_Tyr_Ser-Thr 3.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3041 - - gmx:100781978 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2854 2 89656938 89661088 Ssu5g3041 5 77853495 77857682 PCT