Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3034 atggcgtTCAGCGGGACCCAACAGAAATGCAAGGCTTGTGATAAAACTGTTCATTTCGTCGAAGGTTTATCTGCCGATGGGGCTATTTATCACAAGAACTGCTTCAGATGTAGTCATTGCAATGGCCTTCTTGCGATAAGCAACTACTCATCCACCGAAGGAGTTTTGTACTGCAAGGTACACTATGAGCAGCTTTTCAGGGAAACTGGCACCTACCCTAAGAAATCCCAGGCCCCAAGCAAACTTTCTGCCTTCTTCTCTGGGACTCAAGACAAATGTTCAAAATGCAAGAAAACCGTATATCCATTGGAAAAGTTGAGCGTGGAAGGTGAGTTTTACCACAAATCATGCTTCAGGTGTGCACATGGAGGATGTTTCCTCACCCCTTCGACCTATGCTGCTCTTGATGGATTTCTGTACTGCAAGCCCCACTTCTCTCAGTTGTTCAAGGAGAAAGGTAGCTATAGTTATCTGTCCAAGCAAGCTTCATTGAAGAAAAGTGAAACTGAAATGCAACAAGAACAAGAGGCTGTGGAGAAAACTGAGGATGATCGCTCGGAGTCAGAGGCAGAGACAACTACAAAGGAAACTGAAGAACAAGCTGATGATGCCGTCACGCAAGAGCAGTAG 630 0.4476 MAFSGTQQKCKACDKTVHFVEGLSADGAIYHKNCFRCSHCNGLLAISNYSSTEGVLYCKVHYEQLFRETGTYPKKSQAPSKLSAFFSGTQDKCSKCKKTVYPLEKLSVEGEFYHKSCFRCAHGGCFLTPSTYAALDGFLYCKPHFSQLFKEKGSYSYLSKQASLKKSETEMQQEQEAVEKTEDDRSESEAETTTKETEEQADDAVTQEQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3034 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Ssu5g3034 209 MobiDBLite consensus disorder prediction 167 202 - -
Ssu5g3034 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Ssu5g3034 209 ProSiteProfiles LIM domain profile. 91 151 IPR001781 -
Ssu5g3034 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 201 - -
Ssu5g3034 209 PANTHER OS06G0237300 PROTEIN 1 201 IPR045268 GO:0051015
Ssu5g3034 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 157 - -
Ssu5g3034 209 SMART lim_4 92 144 IPR001781 -
Ssu5g3034 209 SMART lim_4 9 61 IPR001781 -
Ssu5g3034 209 MobiDBLite consensus disorder prediction 166 209 - -
Ssu5g3034 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Ssu5g3034 209 Coils Coil 164 191 - -
Ssu5g3034 209 Gene3D Cysteine Rich Protein 4 74 - -
Ssu5g3034 209 Gene3D Cysteine Rich Protein 87 157 - -
Ssu5g3034 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Ssu5g3034 209 CDD LIM1_SF3 6 68 - -
Ssu5g3034 209 Pfam LIM domain 93 148 IPR001781 -
Ssu5g3034 209 Pfam LIM domain 10 65 IPR001781 -
Ssu5g3034 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 85 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3034 Ssu-Chr5 77748965 77751147 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Ssu5g3034 LIM 3.5e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3034 - K24413 gmx:100499865 365.925