Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3031 ATGGGTTGTGTAGAAACTCCTGTTAAGGTGAAACAATCTTATCTTATTGCTCCTCACGAGTCACATTTTCAATTAGTGCACCATATTCTGAAGGAGCATATCACGCAGACACCTGATTATAAGGTTATTGTATTCTGTATAACTGGGATGGTGACCTCACTCATTTATAACCTTCTTCgggaaatgaaaatgaatgttagggagATACATTCTCGAAAACCTCAGCTCTATCGAACTCGTATATCAGATGAGTTCAGGGAATCCAAACAATTAATTCTTGTCTCATCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTTACCTTAGTCATACAGGTGGGAATTCCTTCTGACCGGGAACAATACATACATCGTCTTGGAAGAACAGGTCGGGAAGGAAAAGAAGGGGAAGGTGTATTGTTGATTGCTCCATGGGAAGAGTATTTCTTAGATGAAATCAAGGATCTACCTCTACAGAAATTCCCCTTACCAGATATAGATCCACAAACAAAGCTCAAGATTGAGAATTCCGTGGCAAAGATTGATAATGACATCAAAGAAGCTGCTTATCATGCTTGGCTTGGTTACTATAACTCCATCAGGGAAATTGGGAGGGAAAAGACCACTATAGCTGAGCTGGCAAACAGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCAATAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAAATAG 753 0.3838 MGCVETPVKVKQSYLIAPHESHFQLVHHILKEHITQTPDYKVIVFCITGMVTSLIYNLLREMKMNVREIHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGVLLIAPWEEYFLDEIKDLPLQKFPLPDIDPQTKLKIENSVAKIDNDIKEAAYHAWLGYYNSIREIGREKTTIAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3031 250 Gene3D - 5 231 IPR027417 -
Ssu5g3031 250 PANTHER RNA HELICASE 3 249 - -
Ssu5g3031 250 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 29 179 IPR001650 -
Ssu5g3031 250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 166 IPR027417 -
Ssu5g3031 250 Pfam Helicase conserved C-terminal domain 28 133 IPR001650 -
Ssu5g3031 250 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 3 249 - -
Ssu5g3031 250 CDD SF2_C_DEAD 10 143 - -
Ssu5g3031 250 SMART helicmild6 53 134 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3031 Ssu-Chr5 77724816 77726422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3031 41 160 Eukaryotic Initiation Factors Gene Family AT3G19760 30.469 4.29e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3031 - - gmx:100808520 475.707