Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3027 ATGCCTAAGGGAAGCCTTGAAGTTTTTCTTGTTAATGCCAAGGGTCTTGAGAACACTGATTATCTCTGTAACATGGACCCTTATGTGATCTTCATATGTCGCACTCAGGAGCAAAAAAGCAGTGTTGCATCAGGTAAAGGAAGTGATCCAGAATGGAACGAGAATTTTGTATTCAACGTGTCTGAAGGCGTTTCCGATCTCCGATTGAAGATCATGGACAGTGATAACATGACGGCTCATGATCTCGTTGGAGAAGCTACCATTCCACTAGCTGCATTGTTTGTTGAAGGAAGCATCCCACCTACTTCATACAATGTTGTCAAGGATGGCCACTATTGTGGGGAGATTAGAATTGGCCTCACTTTCACGCCTAAGGATCGCAGCGAACGCTGCCTAGAGGAAAATTTTGGGGGATGGAAGGAGTCTGGTTACAGAGACTGA 441 0.449 MPKGSLEVFLVNAKGLENTDYLCNMDPYVIFICRTQEQKSSVASGKGSDPEWNENFVFNVSEGVSDLRLKIMDSDNMTAHDLVGEATIPLAALFVEGSIPPTSYNVVKDGHYCGEIRIGLTFTPKDRSERCLEENFGGWKESGYRD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3027 146 PANTHER OS02G0640000 PROTEIN 1 142 - -
Ssu5g3027 146 SMART C2_3c 5 102 IPR000008 -
Ssu5g3027 146 PANTHER C2 DOMAIN-CONTAINING 1 142 - -
Ssu5g3027 146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 125 IPR035892 -
Ssu5g3027 146 Gene3D C2 domain 2 125 IPR035892 -
Ssu5g3027 146 Pfam C2 domain 4 95 IPR000008 -
Ssu5g3027 146 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3027 Ssu-Chr5 77667983 77671781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3027 4 128 C2H2 Transcription Factor Family AT4G21160 26.400 1.44e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3027 - - gmx:100782974 284.263