Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3009 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTATAGAACTAAGGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTGGCACGGAATCGGTACTGACCAAGTCCAAAGATGCTGTTGGAGTCTCCAAAATGACATCCTCATCTTCAGGGTCATCTAAGAGAGCTCGTGCCCTTAGCAACGGGACACAAACAGTGTCATGCCTAGTGGATGGGTGCCACTCTGATCTCAGTAATTGCAGGGACTATCATAGGCGCCATAAGGTCTGTGAAGTCCATTCCAAGACTGCACAGGTCACAATTGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGCTCTGGTAGTTTTTTGTCCAATTATCAAGGCACCCAGTGGCTACCTTTCTCAAGTTCACATGTATACCCGTCCGCTACTGTGGTGAATCCTACTTGGGGGGGAGTTGTTACTTCTGGTGATGTTAGGCTTCATGGTCACAACCAACACCAACAATTGCATTTGGTTGATAAACAGGACCTTTTTCTTGGGCCTTCTCCAACCGGTTATAAAGAAGGGAAGCAAGTGGCATTCATGCAAGGCGACCATACCCTCAACAACCAAAGCCCACATCTTCCAGGTGCTTCCGTGGGCCAGGCCCAGGTGTTTCTTAGGACCAGCGCGTATTCTGAAAGCGGCGGGCTGAGATGTAAAATGTTCTGCGATAGCCTATCAAGTTCGGTCCACGACTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTAAACCAAATGGTGAACCCTCACTCGCCCCTTATGCAACCCTTGGGCCTGAGCCTGCATGATACCAGCTTGGGGTCCGTGGACCCGGTTTTGGGCCCCAATGGGAGTGACCATTCTTCGTCAATGTATAACATAGGGTCTAATGGATCCCAGGGGAATGAAGCCCCTGCACTATTTCCCTTTCAATGGGAATAG 1164 0.4974 MDWNLKAPSWDLSEVDQANLPNMETMEGSSRYGMYRTKGEFSVDLKLGQVGNSGTESVLTKSKDAVGVSKMTSSSSGSSKRARALSNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQWLPFSSSHVYPSATVVNPTWGGVVTSGDVRLHGHNQHQQLHLVDKQDLFLGPSPTGYKEGKQVAFMQGDHTLNNQSPHLPGASVGQAQVFLRTSAYSESGGLRCKMFCDSLSSSVHDSSRALSLLSSPQPHSPGNGLNQMVNPHSPLMQPLGLSLHDTSLGSVDPVLGPNGSDHSSSMYNIGSNGSQGNEAPALFPFQWE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3009 387 Pfam SBP domain 94 167 IPR004333 GO:0003677
Ssu5g3009 387 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 387 IPR044817 GO:0003677
Ssu5g3009 387 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 387 - -
Ssu5g3009 387 MobiDBLite consensus disorder prediction 158 177 - -
Ssu5g3009 387 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Ssu5g3009 387 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Ssu5g3009 387 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3009 Ssu-Chr5 77308880 77311555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3009 1 387 SBP-box Gene Family AT5G50670 42.040 1.29e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu5g3009 SBP 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3009 - - gmx:100806507 682.945