Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3007 atgGAGAAACATCAAGTGTTGTCCCCtatctcatcttcatcatctGCTTCTCCATCCGATTTTAAACTTGGTGATCATATTTCTAATGCTCATGTCAAGAAGGCAGGTTTTTTAAGAACTCAAAGGCCAAGCCAGAAAGGTGGCAAAGAAATCAAGCAGCAAAGATATGCATTTCAAACAAGGAGTCAGATTGATATACTGGATGACGGGTACCGGTGGAGAAAGTATGGGGAAAAGTCGgtgaaaaacaataaattccCTAGAAGTTACTACAGATGTACTTATCGAGGTTGCAATGTGAAGAAACAAATCCAACGCCATTCCAAAGACGAAGAGATTGTGGTAACAACCTATGAAGGGATACATATTCATCCTGTCGAGAAGTCAGCTGAAAGCTTCGAGCAGATATTGAGAAACTTCCACATATACCGCCtaactttataa 444 0.3694 MEKHQVLSPISSSSSASPSDFKLGDHISNAHVKKAGFLRTQRPSQKGGKEIKQQRYAFQTRSQIDILDDGYRWRKYGEKSVKNNKFPRSYYRCTYRGCNVKKQIQRHSKDEEIVVTTYEGIHIHPVEKSAESFEQILRNFHIYRLTL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3007 147 MobiDBLite consensus disorder prediction 1 25 - -
Ssu5g3007 147 ProSiteProfiles WRKY domain profile. 62 127 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g3007 147 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 142 IPR044810 GO:0003700
Ssu5g3007 147 SUPERFAMILY WRKY DNA-binding domain 59 126 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g3007 147 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g3007 147 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 1 142 - -
Ssu5g3007 147 SMART WRKY_cls 67 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g3007 147 Gene3D WRKY domain 54 120 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g3007 147 Pfam WRKY DNA -binding domain 68 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3007 Ssu-Chr5 77267313 77268838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3007 54 143 WRKY Transcription Factor Family AT5G13080 77.778 8.08e-52 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g3007 WRKY 3.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3007 - - gmx:100127378 269.24