Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2998 ATGGAAAATAAACTGGATGTAAGGCTAGGAGAACCAACTCTCATGCCACCTGCAGAAGAAACGAAAAAGGGTCTCTACTTCCTTTCAAACCTTGACCAGAACATAGCAAATCAAGTTCGCACAGTTTACTGTTATAAGTCTGCATGTAGAGGCAATGAGGATGCAGCACAAGTCATCAAGGATTCTTTGTCAAAGGTTCTTGTTCACTATTACCCTATGGCGGGCAGGTTGGTCATTAGCTCAGAAGGGAAACTGATAGTAGACTGCACAGAGGAGGGTGTTGTGTTTGTTGAGGCTGAAGCAAACTGTGTGATAGAGGACTTGGGAGATTTGACAAAGCCTGACCTTGAAACTCTTGGAAAACTGGTTTATGATATCCCTGGTACAACCAACATACTTGAGATACCTCCTTTGCTAATTCAGGTGACAAAGTTCAAATGTGGAGGATTTGTTTTGGGGGTAAACGTGAACCATTGCATGGATGATGGTTTAAGTGCTATGCAATTTGTGAACGCATGGGGTGAGACAGCCAGAGGCTTGGACTGGACAATTTCACCAGTTCTGGACCGAACTATACTCAGAGCACGAAACCCTCCTAAAATAGAGTTCGCACACCATGAATTCGATGAAATTGAAGATGTATCAAATACCAGAAAACTCTTCGATGAAGAGATCCTCTACAAGTCCTTCTGTTTCGACCCAGATAAGCTAGAGCAGCTTAAGAAAAAGGCTACAGAAGATGGTGTTGTAAAGAAGTGCTCTACTTTTGAAGCACTCACAGCTTTTGTGTGGAGAGCTAGAACTGAAGCCTTAAGGATGCACCCTAATCAACAAACAAAGCTACTTTTTGCTGTTGATGGAAGGTCTAGATTCGTGCCTCCAATACCAAAGGGGTACTTTGGCAATGCTATTGTGTTGTCAAATGCTCTATGCAAGGTAGGGGAGTTATTGAATAACCCACTGTCATTTACTGTGGGATTGATTGGCAAGGCAATTGACATGGTCACAGATAGATACATGAGATCTGCTATTGACTATGTTGAAGTCAAAAGAGCAAGGCCTTCCTTAACAGCAACCCTTGTGATCACAGCATGGACTAGGATACCTTTCCACACTACAGATTTCGGATGGGGGAAGCCCTTTTTTTTTGGGCCTGTAAGTTTGCCAGGAAAAGAAGTCATTTTGTTCTTGTCGCATAGTGAAGAAAGCAAAAGCATAAACGTGCTACTGGGTTTGCCCGTTTCTGCCATGAAAAAGTTTGAAACGCTGATGGAGATATGA 1281 0.4278 MENKLDVRLGEPTLMPPAEETKKGLYFLSNLDQNIANQVRTVYCYKSACRGNEDAAQVIKDSLSKVLVHYYPMAGRLVISSEGKLIVDCTEEGVVFVEAEANCVIEDLGDLTKPDLETLGKLVYDIPGTTNILEIPPLLIQVTKFKCGGFVLGVNVNHCMDDGLSAMQFVNAWGETARGLDWTISPVLDRTILRARNPPKIEFAHHEFDEIEDVSNTRKLFDEEILYKSFCFDPDKLEQLKKKATEDGVVKKCSTFEALTAFVWRARTEALRMHPNQQTKLLFAVDGRSRFVPPIPKGYFGNAIVLSNALCKVGELLNNPLSFTVGLIGKAIDMVTDRYMRSAIDYVEVKRARPSLTATLVITAWTRIPFHTTDFGWGKPFFFGPVSLPGKEVILFLSHSEESKSINVLLGLPVSAMKKFETLMEI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2998 426 PANTHER OMEGA-HYDROXYPALMITATE O-FERULOYL TRANSFERASE 7 425 - -
Ssu5g2998 426 Gene3D - 211 425 IPR023213 -
Ssu5g2998 426 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 7 425 - -
Ssu5g2998 426 Gene3D - 2 210 IPR023213 -
Ssu5g2998 426 Pfam Transferase family 13 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2998 Ssu-Chr5 77120800 77125943 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2998 4 424 Monolignol Biosynthesis Gene Families AT5G48930 38.073 1.94e-94 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2998 K15400 - gmx:100527026 734.947