Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2995 ATGGAGTTTGTGAAGAAGTGTAAGAAAGTATTGGGAAGCAGCAAGAGATTGCATCCCGAAAACAATAACAGCATGCCGAGAcaacagaagaagaagaagcgtCGAGTGGCTCCACGGGGTTGCATTTCAGTCTACGTTGGAGCCGAGAGCGAGAGATTCATAATCAAGATAAAGATCGCAAGCCACCCTTTGTTCAAGGCGCTTTTGGACGCTGCTGAGAAAGAATATGGGTATAGAAACGATGGCCCCTTATGGCTCCCTTGCGACGTCGTCTTCTTCTGTGAGGCACTGGCGGAGATGGAGAGCACCCAACATATGATATGGGTTGTGAGTTGA 336 0.4554 MEFVKKCKKVLGSSKRLHPENNNSMPRQQKKKKRRVAPRGCISVYVGAESERFIIKIKIASHPLFKALLDAAEKEYGYRNDGPLWLPCDVVFFCEALAEMESTQHMIWVVS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2995 111 Pfam Auxin responsive protein 6 98 IPR003676 GO:0009733
Ssu5g2995 111 PANTHER SMALL AUXIN-UP RNA-RELATED 1 104 - -
Ssu5g2995 111 MobiDBLite consensus disorder prediction 14 36 - -
Ssu5g2995 111 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 104 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2995 Ssu-Chr5 77079118 77079453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2995 38 93 Calmodulin-binding Proteins AT3G43120 51.786 6.97e-15 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2995 K14488 - gmx:102667331 141.739