Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2994 ATGGAGTTTGTGAAGAAGTGTAAGAAAGTATTGGGAAGCAACAAGAGATTGCATCCCGAAAACAATAACAGCATGCCGAGAcaacagaagaagaagaagccacgAGTGGCTCCCCGGGGTTGCATTTATGTCTACGTTGGACCCGAGAGCGAGAGATTCCTAATCAAGATAAAGATCGCAAACCACCCTTTGTTCAAGGCGCTTTTGGATGCTGCTGAGAGAGAATATGGGTGTAGAAACGATGGCCCCTTATGGCTCCCTTGCGACGTTGTCTTCTTCTGTGAGGCACTGGCGGAGATGGAAAGCACCCAACATGATATGGGTTGTGGGTTGAGATTCTTGAAACAGATTCAAGAGGCAAAGGCGTTCTTGATGAACGGTGATATGTAA 390 0.441 MEFVKKCKKVLGSNKRLHPENNNSMPRQQKKKKPRVAPRGCIYVYVGPESERFLIKIKIANHPLFKALLDAAEREYGCRNDGPLWLPCDVVFFCEALAEMESTQHDMGCGLRFLKQIQEAKAFLMNGDM 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2994 129 MobiDBLite consensus disorder prediction 14 35 - -
Ssu5g2994 129 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 108 IPR003676 GO:0009733
Ssu5g2994 129 PANTHER SMALL AUXIN-UP RNA-RELATED 1 108 - -
Ssu5g2994 129 Pfam Auxin responsive protein 6 97 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2994 Ssu-Chr5 77061562 77061951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2994 14 107 Calmodulin-binding Proteins AT5G20810 39.583 1.67e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2994 K14488 - ccaj:109816450 140.584