Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2993 atgGACTTTGTGAAGAAGTGTAAGAGAGTATTGGGAAGCAACAAGAGATTGCATCCTGAAAACAACGGCAGTGGCAGCTACGGCAAATTGAAAAACAAGGAGAGGCaacaagagaagaagaagaagcctcGGGTTGCTCCACAGGGTTGCCTTACTGTTTACGTTGGACCCGAGAGAGAGAGATTCGTGATCAAGATCAAGATCGCAAACCACCCTTTGTTCCAGGCGCTATTGGACGCTGCTGAGAGAGAATATGGGTATAGAAATGATGGCCCATTATGGCTCCCTTGCGACGTTGACTTGTTCTGTGAGGCACTGGCGGAAATTGAGAGTAGTAGTCAAGACGATATGGGTTCGGTTTCTATGGGTTGCGCCTTTCCTATGGTTCACAGTCACAGGCACAGCCCCTCATCAGCTTCTAATCTGAGTTGTACTACCGATTACGAGCTTTTGGTATATGCTGAGCGATCACTTGTAGATATGTGA 486 0.4486 MDFVKKCKRVLGSNKRLHPENNGSGSYGKLKNKERQQEKKKKPRVAPQGCLTVYVGPERERFVIKIKIANHPLFQALLDAAEREYGYRNDGPLWLPCDVDLFCEALAEIESSSQDDMGSVSMGCAFPMVHSHRHSPSSASNLSCTTDYELLVYAERSLVDM 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2993 161 Pfam Auxin responsive protein 27 107 IPR003676 GO:0009733
Ssu5g2993 161 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 137 IPR003676 GO:0009733
Ssu5g2993 161 PANTHER SMALL AUXIN-UP RNA-RELATED 1 137 - -
Ssu5g2993 161 MobiDBLite consensus disorder prediction 12 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2993 Ssu-Chr5 77054245 77054730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2993 32 119 Calmodulin-binding Proteins AT3G43120 39.773 5.40e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2993 K14488 - gmx:102667331 182.956