Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2984 atggaaaagctgaattttgttaaaaatggaGTGAGCAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACAGATGAAGAGCTTGTCTTTCAATACTTGAAATGCAAGGTCTTCTCCTACCCCTTGCCTGCTTCTATCATTCCTGAGATCAATGTCTGCAAGCACGATCCTTGTGATTTGCCAGGGAATTGTGATCCGCAAGAGAGGTACTTTTTCAGTCCTAAGGAAGCAAAGTATCGAAATGGTAATCGCATGAACCGAACAACCAAGTGTGGGTATTGGAAGGCAACAGGATCAGACAAAAGAATATCATCTTCAACGTGTAATGGTATTGTGGGGATAAGaaaaacattgattttttaTGAGGGGAAATCTCCAAAAGGGTCCAGAACTGACTGGGTCTTGCACGAATATCGCCTGGTCAGCGTAGAAACTGGTGCTTGCAACTCATCCCAGAACTACGTAAACGAGATAGGAGATTGGGTTTTGTGTCGCTTATCGATGAAGAAAAGAAGTATAGAAAGTGATGGCAGTGCCACTCATCACAAGCACAGGCAAAATACAGTTCATCAAACTCGTCCAAGATTGTTTGATTTTATGATGGTAGGCAAGACCCATTCTTCTACATCCTCATCGTGTTCAAGTTCCAGTAACATCATGGAGGTCTCTTCAAGTGCATCGGACCATGAAGAAACAAGTGGCTATGCCCATTTTTAG 714 0.409 MEKLNFVKNGVSKLPPGFRFQPTDEELVFQYLKCKVFSYPLPASIIPEINVCKHDPCDLPGNCDPQERYFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKRISSSTCNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRLVSVETGACNSSQNYVNEIGDWVLCRLSMKKRSIESDGSATHHKHRQNTVHQTRPRLFDFMMVGKTHSSTSSSCSSSSNIMEVSSSASDHEETSGYAHF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2984 237 MobiDBLite consensus disorder prediction 206 230 - -
Ssu5g2984 237 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Ssu5g2984 237 Gene3D NAC domain 23 173 IPR036093 GO:0003677|GO:0006355
Ssu5g2984 237 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 237 - -
Ssu5g2984 237 MobiDBLite consensus disorder prediction 206 237 - -
Ssu5g2984 237 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Ssu5g2984 237 SUPERFAMILY NAC domain 10 168 IPR036093 GO:0003677|GO:0006355
Ssu5g2984 237 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2984 Ssu-Chr5 76788747 76790687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2984 1 171 NAC Transcription Factor Family AT5G13180 62.573 5.32e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g2984 NAM 5.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2984 - - gmx:100812015 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2416 1 67430494 67431944 Ssu5g2984 5 76788747 76790687 ECH
Ssu3g0008 3 177914 178913 Ssu5g2984 5 76788747 76790687 ECH
Ssu5g2984 5 76788747 76790687 Ssu5g2984 5 76788747 76790687 ECH