Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2978 ATGGATGATGGCCGCCAACATGAAAACGGCAGGCATAAGATGGAATACTACGGAGGAGCACATTCCCTGTGGAATACTGATTCCCAGCATCAAGTAAAAGAGCCAAATGCACTAGTTATGAACAAGAAGATTAGGTCCATTATGGCTGAAAGGCAGGCTGCCATTCTAGAACTTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCATTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTTCTGGAACGGGATAATGCCCTGGCAGCCCTTCAGAGTCGGAACAATTCTGTCAACTTCCCATTTGGCAGTGGAATACAATGTGGATCAAAACGGATGCACCATTCTTCAAACCATCTATCTAACATGACTGAAGCTGCATACAGCACAAAGGATATGATAATAAGGGATGCCTCCCCAGTGACTGTTATACCTTCTGAAGCTGTCAAATCCCATCAAGCGAAGAGAACAAAGGAAAACAAGGTAATTAATTCCAAGGCATCAAAGCCACCCTGCAAAGTTAAGAAAATGGGTGAGGATTTAAATAGGCAGGCTTCTTCTGAAGGGACAAAGATCAGATCTGAATGGGATAGGCAGGATATTGGCCTGAATTTGGTTGCATTTGATGAAACTATCATGCCGGTTCCTGTTTGCACATGTACCGGTGTACCACGACAGTGCTACAAATGGGGGAATGGCGGATGGCAGTCATCTTGTTGTACCACGACATTGTCTATGTATCCGCTACCACAACTTCCAAACAAGCGCCATGCCCGCATTGGAGGACGAAAGATGAGCGGAAGTGTCTTTACAAGACTTCTCAGTAGGTTGGCGTCAGAAGGCCATGATTTATCTATACCATTGGATCTTAAGGAATACTGGGCCAGGCATGGAACAAATCGCTACATCACTATCAAGTAG 954 0.456 MDDGRQHENGRHKMEYYGGAHSLWNTDSQHQVKEPNALVMNKKIRSIMAERQAAILELELEAAISEKNEALAARDAAIRQRDEALAQRDNALLERDNALAALQSRNNSVNFPFGSGIQCGSKRMHHSSNHLSNMTEAAYSTKDMIIRDASPVTVIPSEAVKSHQAKRTKENKVINSKASKPPCKVKKMGEDLNRQASSEGTKIRSEWDRQDIGLNLVAFDETIMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLASEGHDLSIPLDLKEYWARHGTNRYITIK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2978 317 Coils Coil 53 73 - -
Ssu5g2978 317 PANTHER - 1 317 IPR010409 -
Ssu5g2978 317 SMART GAGA_bind_2 1 317 IPR010409 -
Ssu5g2978 317 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 317 - -
Ssu5g2978 317 Pfam GAGA binding protein-like family 1 317 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2978 Ssu-Chr5 76747499 76748547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2978 1 317 BBR or BPC Transcription factor family AT2G21240 57.680 2.51e-126 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Ssu5g2978 GAGA_bind 1.5e-101 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2978 - - gmx:100813103 611.298