Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2976 ATGGCAGCTTTTTCATCCCAATACTACCATCCCTTTCTGGTTGACTCCGCATGCTTCTCCATTACTCCTCCCATAAAGAACGTGTCTTCTTTGGGGGAGCAGGAACAAGCCCTCATAAGCACTACTACCCTTCCTCCTCGTTATTTTCACAATATTCATCAGGAACCGTGTTTTAGTGTCCCTAATCAGGAAGCTACCTGTGTTGATCAAAGCTCCAAGGTTACCATCAGTGACACTGAGCCTTCTGTGGTCAAAAACCAGAGTCCTGAGTCCTCCATGGTAGTGGACACGCTTGAAAAAGGTCAACAGGTCACTCACCCTAtggagaagaagagaagagcaAGAAATGGATCTTCCTTGAGTAGCCCCTTATCAAAGgaCTCAACAGAAGGGGAAAACAAGAAGCAAAAGAAGAGCAATGGTGGGGTGAAAGGAGAAAACAAACCAAAAGAAGTGAAGAAGGATCAGAAAAAAGGTCCCGAAGATCCTCCAACGGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCTACGGATAGCCACAGCCTTGCTGAAAGGgtgagaagagagaaaataagtgaAAGGATGAAGACATTGCAACGACTTGTACCAGACTGTGATAAGgtGACTGGAAAGGCACTTGTGTTGGacgaaataatcaattatgttcaGTCCTTACAGAATCAAGTGGAGTTCTTGTCGATGAAACTTGCTTCCGTGAATCCCATGTTCTTTGACTTGGCAATGGACTTAGACACTCTCTTGGTTAGACCCGATCAGAAACTAAATAATATAGCATCACAATCATCACTACCATGTGTAGCACCATGCAGACCCAACCAGGCCATAGCTTTTGCTGACACTACCACTCTGACTACCACCACTACCAGCAGCTTCCCCACCGCTAATAATGACTATCTTTTGGATTATTCATCTTCACTTTTTCTTCAAGGACAGAGGCCAAATGGCTTCTTTGAGgAACAAGCGTTTCTAGTAGGTTGGGAAATTCCAAACAAGTACCAGTATATCTCagtggaaaaagaaaattctaatgCATGA 1059 0.4108 MAAFSSQYYHPFLVDSACFSITPPIKNVSSLGEQEQALISTTTLPPRYFHNIHQEPCFSVPNQEATCVDQSSKVTISDTEPSVVKNQSPESSMVVDTLEKGQQVTHPMEKKRRARNGSSLSSPLSKDSTEGENKKQKKSNGGVKGENKPKEVKKDQKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPDCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDLDTLLVRPDQKLNNIASQSSLPCVAPCRPNQAIAFADTTTLTTTTTSSFPTANNDYLLDYSSSLFLQGQRPNGFFEEQAFLVGWEIPNKYQYISVEKENSNA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2976 352 CDD bHLH_AtBPE_like 166 242 - -
Ssu5g2976 352 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 336 IPR024097 GO:0006355
Ssu5g2976 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 243 IPR036638 GO:0046983
Ssu5g2976 352 SMART finulus 182 232 IPR011598 GO:0046983
Ssu5g2976 352 Gene3D - 173 244 IPR036638 GO:0046983
Ssu5g2976 352 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 336 - -
Ssu5g2976 352 Pfam Helix-loop-helix DNA-binding domain 180 227 IPR011598 GO:0046983
Ssu5g2976 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 226 IPR011598 GO:0046983
Ssu5g2976 352 MobiDBLite consensus disorder prediction 71 99 - -
Ssu5g2976 352 MobiDBLite consensus disorder prediction 71 184 - -
Ssu5g2976 352 MobiDBLite consensus disorder prediction 128 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2976 Ssu-Chr5 76703450 76706488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2976 112 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 53.409 2.05e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g2976 HLH 5.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2976 - - pvu:PHAVU_002G283100g 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2976 5 76703450 76706488 Ssu5g2976 5 76703450 76706488 ECH