Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2973 ATGGCTCCGTCCGACCAATCTGGCCACTCTCTTGTCCCCGGATTCTTATACTCGTCGAAAACACTGTCCCATTTGGATAACACCAATCATGGGTTGCCACCATCCTCCATTGCATCacattcatcatcatcatcatcattgccACAGGGTGGGACCAAGAGTCCTATGATCCTTTCACCTAAGGAAAGAATCCGCATGTTTTCTCCTTCTTACTATGCGGCATGCAGTGCCGGTGGCATCTTCAGCTGTGGCCTTACCCACATGGCTGTCACTCCTCTAGATCTTGTCAAGTGCAACATGCAGaTTGACCCTGTAAAGTACAAGAACATCACATCAGGTTTTGGAGTGTTACTGAAGGAGCAGGGCGTTAAAGGTTTCTTCAGGGGATGGGTGCCTACTCTGCTAGGCTACAGTGCTCAAGGAGCATGCAAGTTTGGGTTTTATGAGTTCTTCAAGAAGTACTACTCAGACCTTGCAGGACCCGAGAATGCAGTCAAGTACAAAACGCTCATATATCTAGCTGGTTCTGCTTCAGCAGAAGTTATTGCTGATGTTGCCCTTTGCCCCATGGAGGCTGTGAAAGTTCGTGTACAAACTCAGCCTGGCTTCGCTCGAGGTTTGTCAGATGGGTTACCCAAGTTCATCAAGGCTGATGGTGCTGCTGGGTTGTATAAAGGACTCGTTCCTCTCTGGGGCCGTCAAATTCCATACACGATGATGAAATTTGCTTCCTTTGAGACTATTGTGGAGATGATTTACAAATACGCCATCCCAACCCCTAAAGAGAAGTGCAGCAAAAATTTGCAGCTTGGAGTGAGTTTTGCAGCTGGATATGTAGCAGGTGTGCTGTGTGCAATTGTCTCACACCCTGCTGACAACCTCGTTTCTTTCCTAAACAATGCCAAGGGAGCCACTGTTGGTGATGCTGTGAAGAAGATTGGGGTAGTGGGTCTTTTCACTCGTGGCCTTCCTCTTCGGATAGTTATGATTGGAACACTAACTGGAGCCCAGTGGGGACTCTATGATTCATTTAAAGTATTTGTAGGGCTGCCTACTACTGGAGGAAGTGCTCCTGCTCCTGCTCCTGCTAAGTAG 1095 0.4685 MAPSDQSGHSLVPGFLYSSKTLSHLDNTNHGLPPSSIASHSSSSSSLPQGGTKSPMILSPKERIRMFSPSYYAACSAGGIFSCGLTHMAVTPLDLVKCNMQIDPVKYKNITSGFGVLLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDLAGPENAVKYKTLIYLAGSASAEVIADVALCPMEAVKVRVQTQPGFARGLSDGLPKFIKADGAAGLYKGLVPLWGRQIPYTMMKFASFETIVEMIYKYAIPTPKEKCSKNLQLGVSFAAGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKIGVVGLFTRGLPLRIVMIGTLTGAQWGLYDSFKVFVGLPTTGGSAPAPAPAK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2973 364 Pfam Mitochondrial carrier protein 171 255 IPR018108 -
Ssu5g2973 364 Pfam Mitochondrial carrier protein 73 156 IPR018108 -
Ssu5g2973 364 ProSiteProfiles Solute carrier (Solcar) repeat profile. 268 347 IPR018108 -
Ssu5g2973 364 MobiDBLite consensus disorder prediction 28 55 - -
Ssu5g2973 364 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 1 361 IPR044677 GO:0005315|GO:1990547
Ssu5g2973 364 ProSiteProfiles Solute carrier (Solcar) repeat profile. 70 154 IPR018108 -
Ssu5g2973 364 ProSiteProfiles Solute carrier (Solcar) repeat profile. 167 251 IPR018108 -
Ssu5g2973 364 SUPERFAMILY Mitochondrial carrier 72 342 IPR023395 -
Ssu5g2973 364 MobiDBLite consensus disorder prediction 28 53 - -
Ssu5g2973 364 Gene3D Mitochondrial carrier domain 70 348 IPR023395 -
Ssu5g2973 364 PANTHER PHOSPHATE CARRIER PROTEIN 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2973 Ssu-Chr5 76666133 76669547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2973 9 363 Chloroplast and Mitochondria Gene Families AT5G14040 77.198 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2973 K15102 - gmx:100800530 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2973 5 76666133 76669547 Ssu5g2973 5 76666133 76669547 ECH