Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2971 atgatGATGAAGTTGCCAACATGGAAAACCATGGCAATGACTATGGTATTGCTTCAGCTGAGCTTTTCCTTGGAGATTTTCTGCCTCTCTTATCATGCAGATAGAATTGTTCGGCTTCCTGGGCAACCCAACATAGGCTTCCAACAGTTCTCAGGATATGTTACAGTGGATGACATGAAACACAAGGCTctcttttactattttgttgAATCAGAAACTGATCCAGCTTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTTGGAGTGGGTGCATTCTCTGAAAATGGACCTTTTAGACCCAATGGAGAAGTTCTGATTAAAAATGAGTACAGTTGGAACAGAGAGACAAACATGTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGATGACTCCTCTTATGAGGCTGTGAATGATGAGACAACAGCCAGGGACAATCTTGTATTCTTGCAACGATGGTTCAACAAGTTCCCTCAatacagagagagagatttgtttCTAGCAGGTGAAAGTTATGCAGGACATTACGTTCCACAACTTGCAAAGCTCATGcttgaaataaacaaaaaggagAAGATATTCAATCTGAAAGGCATAGCCTTGGGTAACCCAGTTCTAGAATATGCTACTGACTTCAATTCAAGGGCCGAGTTCTTTTGGTCTCACGGATTGATATCAGATTCAACGTACAAACTGTTCACTACAGGTTGTAATTATTCCCGGTATGTCAGTGAATACTATAGAGACTCAATTTCGCCGCTTTGTTCAAAGGTTATGAGACAAGTAAGCAGAGAAACCAGTAAGTTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCCTCCGTGCTTTCACAATCCAAAGCTATTTGTCCACAAGGCCAACAAAAAAATGAGAGCATAGATGTATGTGTAGATGACAAAGTTACAAATTACTTAAACCGAAAAGATGTACAAGAGGTGCTCCACGCCAAGCTTGTTGGAGTTCGAAAGTGGGATGTCTGCAGCAACATTCTGGACTATGATATGCTCAACTTGGAGGTACCAACACTCCCTGTTGTTGGATCACTCATAAAAGCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGCACCTTGGTCCAAAAGCTGGCTAGACAACTAGGACTGAATACAACAGTTCCTTATAGAGTATGGTTTGAAGGCCAGCAGGTTGGTGGCTGGACTCAAGTTTATGGTGATACCCTCACATTTGCTACTGTCAGAGGTGCCTCCCATGAAGCCCCTTTCTCACAACCCGAAAGATCACTTGTTTTGTTCAAGTCATTCTTGGAAGATAGGCCACTACCTGAAATTTTCTGA 1404 0.4081 MMMKLPTWKTMAMTMVLLQLSFSLEIFCLSYHADRIVRLPGQPNIGFQQFSGYVTVDDMKHKALFYYFVESETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLIKNEYSWNRETNMLYLETPVGVGFSYAKDDSSYEAVNDETTARDNLVFLQRWFNKFPQYRERDLFLAGESYAGHYVPQLAKLMLEINKKEKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYKLFTTGCNYSRYVSEYYRDSISPLCSKVMRQVSRETSKFVDKYDVTLDVCISSVLSQSKAICPQGQQKNESIDVCVDDKVTNYLNRKDVQEVLHAKLVGVRKWDVCSNILDYDMLNLEVPTLPVVGSLIKAGVRVLIYSGDQDSVIPLTGSRTLVQKLARQLGLNTTVPYRVWFEGQQVGGWTQVYGDTLTFATVRGASHEAPFSQPERSLVLFKSFLEDRPLPEIF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2971 467 Gene3D - 315 351 - -
Ssu5g2971 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 465 IPR001563 GO:0004185|GO:0006508
Ssu5g2971 467 Gene3D - 361 459 - -
Ssu5g2971 467 Pfam Serine carboxypeptidase 43 459 IPR001563 GO:0004185|GO:0006508
Ssu5g2971 467 PANTHER CARBOXYPEPTIDASE 29 465 - -
Ssu5g2971 467 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
Ssu5g2971 467 Gene3D alpha/beta hydrolase 30 292 IPR029058 -
Ssu5g2971 467 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Ssu5g2971 467 SUPERFAMILY alpha/beta-Hydrolases 37 464 IPR029058 -
Ssu5g2971 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Ssu5g2971 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Ssu5g2971 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Ssu5g2971 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2971 Ssu-Chr5 76651897 76654712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2971 323 463 Calmodulin-binding Proteins AT2G22960 27.660 9.97e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2971 K16297 - gmx:100800002 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2971 5 76651897 76654712 Ssu5g2971 5 76651897 76654712 ECH