Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2970 ATGGCAAAAGAGCAAAACCAGACATTGCAGGGCAAAGGCCAAGAGAAGGAATTGGAACTCGAGAGTGACGAGTCTGAGGCAGAGATTGAGGTCCCATTACCTCTCACTGTGACTTCTCGGGTTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCGAATTGGTTCGTAAACGCACTGCAAAGCATTGTTCTTCTGGCTTCCCTCACCGCACTTCCACCACCATGCCTTCTACTTCTTGCATCAGAGAATCGTTGGGGAATTCAAAATTGGACCTGCACCCTGATCAAACAGAAATTAGCTTGTGGGAGAGGCTTGGGAATGCTGCAATGTTGGACATTGAATCGAGCTCCTTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACAGTAGTAGCAATGAACATTCCGAGGATGAGATGAACAAAGCTCTCGAGGTAACTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTTTTCAATTGCCCTGGGAATGCTGATGCATGTCCACAAGAAGCAGCAGCTGTTATAAAGATATCATCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTATGAATTTGCCAAATGGTTGGGAGTCCCAACTCCACAGGGTAGAGTCATTCACAATACCAGCTTAGAATGGCAACAAATAAAGGAAGCTGCAGAAAAAGCTAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGTGAAGTGACATGTTTTGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTCTTTTTTATGAGTTACGTACATGGTTCACCCTTGCTTGAAAACTCTAGTGCGTTTGAGTCAAGGGAATCTGCAGAAAGAACATCAAAAGCTCTTGGGAGGGTATTGATGCTGGACCTTGTCATCAGAAATGAAGATAGGCTGCCTTGCCGTGAGCTTAGATGGCGTGGGAATCCTGCAAATTTGTTGTTGGCTGAAAAGATTAACTGTGCAAATACAGATGCGCTAGAAGCAGCTTTTGATTCTGCAATTAACCGATATAGACCAAAGGTGATTAGGGCACTTCAGAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGACTCGATTCTCATAGTCCTGGCTTGATATCACAGTCCTCTGATCTTTCAGAGATCGCAGAATCACCAAGATCTGCTGACATGAGCCTTAAAAGTCAAACATCAGGAGAATCACTGTCTCCGGACTTCAACATTGTAGCCATTGATTCAGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAGACGATCAGGTTAATTACCCTAAGTTGGTTGAGTTGCTAGTCAATAGTTCTGAATTTGCCTCAAACCTGTTATATGATATAACTGGAGGGAAATTAGGATGTCCCCCACCAGAAGACAGGGATAAAACTGATGTACATGCAAGTGACACAACATTTGTAGTTCATGCATTCCGTAGTGGTTTCCGTGCTGCTCTTAGGGATCTGCAGGGATTCCATATATTCCTACTCACACTTCACCAAAGACTTGATACTTTGTTACGATCATTTATGAACATGATAAGCAAAATATCTTTGGGGGAATCTGACAAAGAGGATTCTATGGTTCCTGACTCACCTTTGCTGGCTGCTGGTGGTAGTTGTTCCTCTCCAACATGTAGGGAGAGGCTTGCTAATGATAACCATCAAGATTTTATTGATTCAGAATCACAGAGAACTGCTTCAAGGGCATCATCTTCAGGCAATAGAGATTGCAGTGACTCTGCTCCTATGTCAAGAGAAACTTGGCATGGAAAATTCTATAAAGGAAATGGGGAACCACTTCGTAGTCTCCGTTTGACTACTAAGCTCCGTGACTTCCATAAATTTGCCAAGATTGATGCTGAATCTAATAAAGAATTGGAACAGTGGAATGAACTGCTTAAAAATGATGCCGTCAAACTATGCCAGGAGAACAATTTCAATCCAGGATTTTTTGAGGGAAGTGATAATAACTGTGTTGTTGATGCATATGAACTTAAGGTCAGACTTGAGCATATTCTCGAGAGAATTGCATTGATATCAGATGCTGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTGTATACACACTGCAATACTTGGGAATCACAAATATCTTGTGTTTGTGTTCCAATGAAATTGGACAGTCAGAAACTCAGTTTCCTGATCTCTTCGAGTACAAGAATTTCTCTGTATGTGACAGTGATGATTATAACATCAGCAGCATATTTGAAGAAGCATGTGATTTTATAGATTACGTTGAACAAATAGGTCAGAGAGTtttagttcattgctttgaGGGGAGAAGCAGAAGTGTCACGTTGGTCCTGGCTTACTTAATGCTCAGGAaGAAGTATACTTTATCAGCAGCATGGCAAGCTCTGAAACGAGTTCACCGTCGAGCACAACCAAACGACGGTTTTGCAAAGATCTTATTGGAACTGGATCAGAAACTACACGGAAAGGTTTCGATGGAATGGCACCAGCGGAAACCAATGATGAAAGTCTGCCCCATCTGTGGTAAGAACGCTGGACTAAGCAGCAGCTCACTCAAGCTTCATCTGCAGAAATCACACAGAAAGCTATCCTCTGGGAGTGTAGATAGTGCTATGACTATGGAAATCCAGAAAGCGTTAACAGCTTTGAAGATTAGCCGTGGTGGGAGTGTCAGCCCCACACAAAGGTCAACTCATCCAATAATAGATCAATAG 2778 0.4302 MAKEQNQTLQGKGQEKELELESDESEAEIEVPLPLTVTSRVLYMLGDITAGPAFRFTQWLELVRKRTAKHCSSGFPHRTSTTMPSTSCIRESLGNSKLDLHPDQTEISLWERLGNAAMLDIESSSFSWDMLSSLHHTEHSSSNEHSEDEMNKALEVTVNSGGVVFFAFFNCPGNADACPQEAAAVIKISSSRMATQSERLGYEFAKWLGVPTPQGRVIHNTSLEWQQIKEAAEKAREAANSEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLENSSAFESRESAERTSKALGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLAEKINCANTDALEAAFDSAINRYRPKVIRALQKERRSTSVDCRLDSHSPGLISQSSDLSEIAESPRSADMSLKSQTSGESLSPDFNIVAIDSGVPRRPPAGKRADDQVNYPKLVELLVNSSEFASNLLYDITGGKLGCPPPEDRDKTDVHASDTTFVVHAFRSGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNMISKISLGESDKEDSMVPDSPLLAAGGSCSSPTCRERLANDNHQDFIDSESQRTASRASSSGNRDCSDSAPMSRETWHGKFYKGNGEPLRSLRLTTKLRDFHKFAKIDAESNKELEQWNELLKNDAVKLCQENNFNPGFFEGSDNNCVVDAYELKVRLEHILERIALISDAASTEKPSAVTSSLFIGGALAARSVYTLQYLGITNILCLCSNEIGQSETQFPDLFEYKNFSVCDSDDYNISSIFEEACDFIDYVEQIGQRVLVHCFEGRSRSVTLVLAYLMLRKKYTLSAAWQALKRVHRRAQPNDGFAKILLELDQKLHGKVSMEWHQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRSTHPIIDQ 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2970 925 ProSiteProfiles Dual specificity protein phosphatase domain profile. 698 843 IPR020422 GO:0006470|GO:0008138
Ssu5g2970 925 Pfam Actin-fragmin kinase, catalytic 106 390 IPR015275 -
Ssu5g2970 925 SMART dsp_5 698 840 IPR020422 GO:0006470|GO:0008138
Ssu5g2970 925 MobiDBLite consensus disorder prediction 375 407 - -
Ssu5g2970 925 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 1 925 - -
Ssu5g2970 925 SUPERFAMILY Protein kinase-like (PK-like) 58 434 IPR011009 -
Ssu5g2970 925 MobiDBLite consensus disorder prediction 573 592 - -
Ssu5g2970 925 MobiDBLite consensus disorder prediction 369 407 - -
Ssu5g2970 925 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 767 819 IPR000387 GO:0016311|GO:0016791
Ssu5g2970 925 Gene3D - 275 376 IPR036940 GO:0016301
Ssu5g2970 925 Pfam Dual specificity phosphatase, catalytic domain 720 839 IPR000340 GO:0008138|GO:0016311
Ssu5g2970 925 CDD DSP 699 836 - -
Ssu5g2970 925 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 925 IPR035010 GO:0004721|GO:0009737|GO:0043622
Ssu5g2970 925 MobiDBLite consensus disorder prediction 564 594 - -
Ssu5g2970 925 MobiDBLite consensus disorder prediction 1 27 - -
Ssu5g2970 925 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 698 843 IPR029021 -
Ssu5g2970 925 Gene3D Protein tyrosine phosphatase superfamily 681 853 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2970 Ssu-Chr5 76627894 76635449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2970 10 921 Protein tyrosine phosphatase (PTP) family AT5G23720 63.991 0.0 1134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2970 K14165 - gmx:100791993 1624.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2970 5 76627894 76635449 Ssu5g2970 5 76627894 76635449 ECH