Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2967 ATGATGTCTGCTTGGATGCAAGACACTGGAGAAGAACAAAACTCTTCTGCTTCATGGCCAAACTCAAACGCCAACGTGTCATTGTGTGCTTACAAGCCCATCTCCGAGATCCATGAAGAATGGCACGTGCCCAACAACAGTACCCAAAACTTGGCTGATAATATGTTGCTCCAACCATTGCACACTTTCTCTTCCACTAACCTCCTCGACCTATCTCAACTGCACAACTTTCTCATTCCCAAGCCCACCTTTTACCCCTTAGAGCATGGCTTCGACGCGGGTTCCGATGTGGGACTTCTCGACCCTCAACCTTCCTTCACTTCAAAAGTACTGTTGAGCAaaggtgatggtgatggtgatggtgtcTTCTTGAGCTCAAATAACAACCAGTTAACCCTTCCAAAGTTAGCAACCATGTGTGTAGTGCCCCCCCAACAAGGTGGCTTTTCGGGTTTCAAGAACATTAACTCTAATCACGAGGAGGGTTCTAGAAAGTCCTTGCTTCTTAGCAGGTCCAACATACTGAGACCCCTTGAATCGTTGCCCCCATCTGGCGCACGGCCAACTCTTTTTCAAAAGAGAGCGGCACTTAGGAAAAACATGGCAGAAAACTGCAAAGTTGGGGAAGGGAACAGTGATAGTAAGAAGGGGAAGACTCACAATGAAGATGGGAGTTTTGATGGATTGGGGTTGAATTATGACTCTGACGAGAGTGATAACAATAAGATGGAAGAGAGTACTGCAAGGAACGGTGGAAACGGCTCGAATGCTAACAGCACCATCACCGGCGGCGTGGATCAGAAAGGCAAGAAGAAAACGGGAATACCTGCTAAGAATTTGATGGCCGAACGCCGCCGAAGGAAGAAGCTCAATGATAGACTCTATATGCTCAGATCTGTTGTTCCCAATATTAGCAAAATGGACAGGGCCTCAATCCTTGGGGATGCAATCGAGTATTTGAAGGAACTTCTGCAAAGGATCAGTGACCTTCACAATGAATTGGAGCCAACACCAGCTGGCTCTTCATTGACACCTGCTTCAAGCTTTCTACATCCTTTGACACCCACTATACCAACACTACCTGCAGCCCGTATGCAAGAAGAACTTTGCCTCAGCTCATTGCCGAGCCCTAATGGCCAACCTGCGAAGGTTGAGGTTGGGTTGCGCGAAGGAAGAGCTGTAAACATCCACATGTTTTGCGACCGCAAACCCGGTCTCTTGCTCTCTACCATGAGGGCTCTCGACAACCTTGGATTAGACATCCAGCAGGCAGTTATCAGCTATTTCAATGGATTTGCTATGAATATTTTCAGAGCTGAGCAATGCAACGAAGGTCAGGATGTCCATCCCGAGCAAATAAAAGCAGTTCTGTTGGATTCAGCTGGCTTCCATAGCATGACCTAA 1404 0.4644 MMSAWMQDTGEEQNSSASWPNSNANVSLCAYKPISEIHEEWHVPNNSTQNLADNMLLQPLHTFSSTNLLDLSQLHNFLIPKPTFYPLEHGFDAGSDVGLLDPQPSFTSKVLLSKGDGDGDGVFLSSNNNQLTLPKLATMCVVPPQQGGFSGFKNINSNHEEGSRKSLLLSRSNILRPLESLPPSGARPTLFQKRAALRKNMAENCKVGEGNSDSKKGKTHNEDGSFDGLGLNYDSDESDNNKMEESTARNGGNGSNANSTITGGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYLKELLQRISDLHNELEPTPAGSSLTPASSFLHPLTPTIPTLPAARMQEELCLSSLPSPNGQPAKVEVGLREGRAVNIHMFCDRKPGLLLSTMRALDNLGLDIQQAVISYFNGFAMNIFRAEQCNEGQDVHPEQIKAVLLDSAGFHSMT 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2967 467 MobiDBLite consensus disorder prediction 245 266 - -
Ssu5g2967 467 CDD bHLH_AtAMS_like 277 342 - -
Ssu5g2967 467 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983
Ssu5g2967 467 Gene3D - 266 337 IPR036638 GO:0046983
Ssu5g2967 467 Pfam Helix-loop-helix DNA-binding domain 281 323 IPR011598 GO:0046983
Ssu5g2967 467 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 56 466 - -
Ssu5g2967 467 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 341 IPR036638 GO:0046983
Ssu5g2967 467 CDD ACT_UUR-ACR-like 396 456 - -
Ssu5g2967 467 MobiDBLite consensus disorder prediction 209 223 - -
Ssu5g2967 467 MobiDBLite consensus disorder prediction 204 274 - -
Ssu5g2967 467 PANTHER BHLH TRANSCRIPTIONAL FACTOR 56 466 - -
Ssu5g2967 467 SMART finulus 280 329 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2967 Ssu-Chr5 76581727 76586080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2967 86 440 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.243 2.01e-100 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g2967 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2967 - - var:108344591 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2432 1 67771134 67774531 Ssu5g2967 5 76581727 76586080 ECH
Ssu5g2967 5 76581727 76586080 Ssu5g2967 5 76581727 76586080 ECH
Ssu5g2967 5 76581727 76586080 Ssu1g2432 1 67771134 67774531 PCT