Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2966 ATGGCGTCGTCGGAGGTATCGATCAAGGGAAATTCCGTGAACGGAAAAGGAGAAAACGGTTCTTGTGGCTATAACAACGGGAACGATGTTAGGAACGGTGGAGGAGAGGGTCAGAAtgcttcttcatcatcatccgCGAGAGACGCGCAAGCTGCGCTTTACTGGGAGCTTTGGCACGCGTGTGCGGGTCCTCTCGTGACGGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAGGGACATATTGAGCAGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCACATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGATGCTCAGGGCGGAGCCAGACACGGATGAGGTGTTTGCTCAAGTGAGCTTACTTCCTGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGCGCCTTCggctccacctccacctcctcgATTTCACGTGCATTCGTTTTGTAAAACGCTGACGGCATCTGATACGAGTACTCACGGTGGGTTTTCGGTGCTGAGACGACATGCCGATGAATGCCTCCCTCAGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGGAGCGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGACACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTAGTTGCCGGGGATgcgtttatatttttaagGGGTGAGAATGGAGAACTTCGAGTTGGTGTTAGGCGTGCAATGAGACAGCAGGGTAATGTTCCGTCATCGGTTATCTCGAGCCACAGCATGCATCTCGGTGTACTTGCAACTGCTTGGCATGCCATATTGACCGGGACCATGTTCACTGTGTATTACAAGCCTAGGACTAGTCCAGCTGAATTTATTGTTCCATATGAACAATACATGGAGTCTCTCAAAAGTAATTATACCATTGGGATGCGTTTTAAAATGAGGTTTGAAGGTGAAGAGGCTCCCGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGATCCCAAAAGGTGGCCAAAGTCCAAATGGAGAAGTCTTAAGGTGAGATGGGATGAAACATCAAACATACCTCGTCCCGAGAGAGTTTCCCAATGGAAAATAGAGCCTGCTCTTGCACCTCCTGCTATGAATCCCCTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAACGTCGTTCCATCATCCCCAGATTCCTCTGTTCTTACTCGTGAAGCAACATCTAAAGTAAGCGTAGACCCTTTGCCAGCAAGTGGATTTCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGGTAATTTTGCTGAAAGCAATGAACCTGATACGGCAGAGAAGTCTGTTGTGTGGCCACCTGCTGCAGATGATGAAAAGATGGATGTTGTTTCTAACTCAAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGGAAGGCATGAACCAACATATCCAGATCTACTTTCAGGCTTTGGTGCCCATGGAGATCAATCATCCCATCCATCCTTTGTTGATCAAACTGGTGCTGTAGCTAACCCTGGTAGAAAACATTTGTTGGACCGTGAAGGCAAACATAATGTTCTTAGTCCATGGTCTGTAGTGCCCTCTGGTCTTTCACTCAATCTCTTGGACTCTAATACAAAAGGCTCTGCACATGGTGGTGATATAACTTATCGAGGGAATTTGAGGTATAGTAGTGCATTTGGTGACTACGCTGTGCTTCATGGACATAAAGTTGAGCATTCACATGGAAACTTTTTGatgccaccaccactgtcaacTCAATATGAGAGTCCTCGTTCAAGAGAACTGTTGCCCAAACCAATATCAGGAAAACATTGTGAGGTTTCAAAACCAAAAGACAGTGACTGTAAGCTATTCGGCATCTCACTTCTCAGCCCCATTGCACCAGAGCCTTCTTTATCACAAAGAAGTGTTGCAAATGAGCCATTTGGTCACATGCATACTACATTACACCAACAACGTACTCTTGAAAATGATCAGAAGTCTGAGCATTCAAAGGGATCGAAACCAGCTGATGGTCTGCCGATTGATGACCATGAAAAGCTGTTACAAACTTCTCAGCCACATCTGAAAGATGTTCAACCTAAACCTCATAGTGGTTCCGCTAGAAGTTGCACTAAAgttCACAAGAAGGGTATTGCACTTGGTAGGTCAGTGGACCTTACAAAATTCAGTAATTATGTTGAATTAATTGCTGAATTGGATCAGCTATTTGAATTTGGAGGTGAATTAACTTCTCCACAAAAGGATTGGCTTATTGTCTACACAGACAATGAGGGTGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTAGCAATGGTTCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGTGCCCAGGCACTTTAAGTTCGAAGAATGAAGAGAATCATTCAGCTAGTGAGGGGGCAGACGCACAAGAAATTAAATGGTTTTCGCGCGAGCGGCGTAGATTGAAGTTGAAGTCATGTCACGAGAGTAGAAAGGGGACACTTGGGTCTGGAAATCTTGATGGAGGATTTGAAAATTCTCTAATGAAATGTATATGTGGTCAATCGTTGTGA 2670 0.4464 MASSEVSIKGNSVNGKGENGSCGYNNGNDVRNGGGEGQNASSSSSARDAQAALYWELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLRAEPDTDEVFAQVSLLPEPNQDENAVEKEAPSAPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPQLDMSKQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYEQYMESLKSNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPKSKWRSLKVRWDETSNIPRPERVSQWKIEPALAPPAMNPLPMPRPKRPRSNVVPSSPDSSVLTREATSKVSVDPLPASGFQRVLQGQELSTLRGNFAESNEPDTAEKSVVWPPAADDEKMDVVSNSRRYGSESWMSMGRHEPTYPDLLSGFGAHGDQSSHPSFVDQTGAVANPGRKHLLDREGKHNVLSPWSVVPSGLSLNLLDSNTKGSAHGGDITYRGNLRYSSAFGDYAVLHGHKVEHSHGNFLMPPPLSTQYESPRSRELLPKPISGKHCEVSKPKDSDCKLFGISLLSPIAPEPSLSQRSVANEPFGHMHTTLHQQRTLENDQKSEHSKGSKPADGLPIDDHEKLLQTSQPHLKDVQPKPHSGSARSCTKVHKKGIALGRSVDLTKFSNYVELIAELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMCPGTLSSKNEENHSASEGADAQEIKWFSRERRRLKLKSCHESRKGTLGSGNLDGGFENSLMKCICGQSL 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2966 889 SUPERFAMILY DNA-binding pseudobarrel domain 157 290 IPR015300 -
Ssu5g2966 889 SMART B3_2 161 263 IPR003340 GO:0003677
Ssu5g2966 889 MobiDBLite consensus disorder prediction 389 434 - -
Ssu5g2966 889 CDD B3_DNA 159 261 IPR003340 GO:0003677
Ssu5g2966 889 PANTHER AUXIN RESPONSE FACTOR 2 37 839 - -
Ssu5g2966 889 Pfam Auxin response factor 287 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu5g2966 889 SUPERFAMILY CAD & PB1 domains 734 809 - -
Ssu5g2966 889 MobiDBLite consensus disorder prediction 681 705 - -
Ssu5g2966 889 Gene3D - 158 263 IPR015300 -
Ssu5g2966 889 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 839 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu5g2966 889 Gene3D - 324 394 - -
Ssu5g2966 889 MobiDBLite consensus disorder prediction 395 411 - -
Ssu5g2966 889 MobiDBLite consensus disorder prediction 413 428 - -
Ssu5g2966 889 MobiDBLite consensus disorder prediction 1 44 - -
Ssu5g2966 889 Pfam B3 DNA binding domain 161 262 IPR003340 GO:0003677
Ssu5g2966 889 Pfam AUX/IAA family 778 821 IPR033389 -
Ssu5g2966 889 Gene3D - 728 821 - -
Ssu5g2966 889 ProSiteProfiles PB1 domain profile. 732 814 IPR000270 GO:0005515
Ssu5g2966 889 ProSiteProfiles B3 DNA-binding domain profile. 161 263 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2966 Ssu-Chr5 76576018 76580919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2966 1 845 B3 DNA Binding Superfamily AT5G62000 65.358 0.0 1101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu5g2966 AUX_IAA 4.4e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2966 - - gmx:100815956 1470.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2966 5 76576018 76580919 Ssu5g2966 5 76576018 76580919 ECH
Ssu5g2966 5 76576018 76580919 Ssu1g2433 1 67775933 67779961 PCT