Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2965 ATGCGTTTCGCGAATCTCGATGACACTCCAATGTTCCGCCAACAGCTCCAGTGTTTGGAGGAAGGTGCAGAATCGTTGCGCGCGAGATGCTGCAAGTTCTACAAAGGATGTCGAAAGTATACGGAAGGTCTTGGAGAGGCATATGATGAGGACATTGCATTTGCAAGTGCCATAGAAAATTTTGGAGGAGGGCACAGTGATCCTCATTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTTACTATAGCATTGAGAGAAATCAGTACATACAAGGAACTGCTCCGGTCACAAGTAGAGCACATTTTCAATGACCGGTTACTACCCATTGTCAATGTTGACATCCACGAAGTCAAGGAAGCTCGTAAGTGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGACATTGCCACTGGCATAGAAGAGGAATTACGGGACGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATCTGGTTGGCACTCTTAATAACATTGAGATCAAGAAGAGATTTGAGTTTTTAGAGGCTGTAGCTGGAATTATGGATGCTCATCTTCGATACTTCCAACAGGGGTATCAGCTATTACATCAGATGGAACCTTTCATTAATGAGGTTATGGATTATGTACATCAGTCAAGAGAAAGTTACAACAATGAGCAGATTTCACTTTATAAAAGAATGCAAGACTacaaaaaacaagtttttgaagAAAGTAGGTTGTCCTTGAATGGTCCTTATGGTTCTCCTAGGGGAGATTCTGCGCATCCATTTTGTAGGATCTCTAATGAAGTGGCAGATGTAGTGATGGAATCTGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGACAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAGTGGGTCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGTGGCACGGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTAGCACGTCATACAGTAAACCTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCAAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGCGTCCAGACACTGGGAATGCCTCTCTCAGCTGACTCAGAAAACGGTGACTCTCACTCAGATGACTATATTGATAAGTTAGAAAGTTCTCCAGATGATGATCACAATGTCACTGTGAAGTCTGCATCCAAGAATTCCACCCCTAATAACCACTTACGTTCATCGAGAAGTTTGCAGTTATATAAACACAGTATAAGAATTGACAAGCCAATTGATGTTCTTAGAAAGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCTTTAAACCTTGGCATCCTTATATGCATCGAGTGTTCTGGTGTACATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTTAAAGTCTGGGAACCCTCTGTCTTAAGTATGCTTAAGTCACTAGGCAATGTTTTTGCAAACTCAGTTTGGGAGGAGCTGCTGCGTTCACCAAGTAATTTGCAAACTGTTGACACCCCTGCAGGGTAA 1800 0.4172 MRFANLDDTPMFRQQLQCLEEGAESLRARCCKFYKGCRKYTEGLGEAYDEDIAFASAIENFGGGHSDPHFVALGGPVMTKFTIALREISTYKELLRSQVEHIFNDRLLPIVNVDIHEVKEARKCFDKASLVYDQAREKFMSLRKSTKIDIATGIEEELRDARASFEEARFNLVGTLNNIEIKKRFEFLEAVAGIMDAHLRYFQQGYQLLHQMEPFINEVMDYVHQSRESYNNEQISLYKRMQDYKKQVFEESRLSLNGPYGSPRGDSAHPFCRISNEVADVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWSGSYGSNQPSPKRNSGTENGSGLLSRWLSSHYHGGVHDERSVARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGMPLSADSENGDSHSDDYIDKLESSPDDDHNVTVKSASKNSTPNNHLRSSRSLQLYKHSIRIDKPIDVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWEPSVLSMLKSLGNVFANSVWEELLRSPSNLQTVDTPAG 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2965 599 Gene3D Arf GTPase activating protein 486 597 IPR038508 -
Ssu5g2965 599 MobiDBLite consensus disorder prediction 471 485 - -
Ssu5g2965 599 SMART PH_update 293 430 IPR001849 -
Ssu5g2965 599 CDD BAR_SFC_plant 15 215 IPR035670 -
Ssu5g2965 599 SMART arf_gap_3 499 598 IPR001164 GO:0005096
Ssu5g2965 599 Gene3D - 285 436 IPR011993 -
Ssu5g2965 599 Gene3D Arfaptin homology (AH) domain/BAR domain 4 249 IPR027267 -
Ssu5g2965 599 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Ssu5g2965 599 SUPERFAMILY PH domain-like 203 428 - -
Ssu5g2965 599 MobiDBLite consensus disorder prediction 446 470 - -
Ssu5g2965 599 Pfam BAR domain of APPL family 6 233 - -
Ssu5g2965 599 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Ssu5g2965 599 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 582 IPR001164 GO:0005096
Ssu5g2965 599 SUPERFAMILY ArfGap/RecO-like zinc finger 499 588 IPR037278 -
Ssu5g2965 599 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Ssu5g2965 599 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Ssu5g2965 599 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Ssu5g2965 599 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
Ssu5g2965 599 CDD PH_ACAP 295 432 - -
Ssu5g2965 599 CDD ArfGap 502 597 - -
Ssu5g2965 599 Pfam PH domain 294 427 IPR001849 -
Ssu5g2965 599 Pfam Putative GTPase activating protein for Arf 502 588 IPR001164 GO:0005096
Ssu5g2965 599 PANTHER CENTAURIN/ARF 1 598 IPR045258 GO:0005096
Ssu5g2965 599 MobiDBLite consensus disorder prediction 441 485 - -
Ssu5g2965 599 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2965 Ssu-Chr5 76510467 76522140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2965 509 585 C2H2 Transcription Factor Family AT4G21160 53.846 2.28e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2965 K12489 - gmx:100792517 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2435 1 67820531 67828152 Ssu5g2965 5 76510467 76522140 ECH
Ssu5g2965 5 76510467 76522140 Ssu5g2965 5 76510467 76522140 ECH
Ssu5g2965 5 76510467 76522140 Ssu1g2435 1 67820531 67828152 PCT