Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2962 ATGGCACCAGATTCAGAGAAAATTTGTGAAGGTGCTGCAGAGTCTCCAACTACCCCAGTTGGAAGACAGGCACCGGAGGGTGACCCCAAAAGCCAAAGAATCAAAGCCACGAGGCACCCTCGATGGACCAGACAGGAAACACTTGTTCTCATAGAGTCCAAGAAAATGGTGGAAAATGGAGAACAAGTCTGCAGATTCAGATCAGCATCAGGGTTCCTTCAAACCGACCCAAAATGGGACATGGTGTCATCGTTGTGTCAGCAGCGTGGTGTGAAGAGAGGGGCCGTTCAGTGCAGGAAAAGATGGGGCAATCTTCTCACTGATTTCAGGAAGATCAAGAAGTGGGAGTCGGGTATAAAGGAGGAGAGTGAATCGTTTTGGATCATGAGAAATGATGTGAGGAAGGAGAAGAAATTGCCCGGGTTCTTTGATGCTGTGGTGTATAATGTGTTAGATGGAGGGGTGTGTACCACTGTTGCATTTCCCTTGACACTGGTTAAGATGGCACCAAAAGTGGAGAATGGTGTTGAGGGAGTGGCTCTGGAACAATGTAAGGAGAATGAggatgaggaggaggaggaggaagatgaGGCAATTGTTGATAGTGAGAAAATGGGTTGGAGCACTGAGGAGGAAAACACAGAGACAAACATAACTGGAAATATGGTTAATGGTTTTTTGAAAACACCAGGTCCTAAGGTAAATGGCACCACAGGGAGTCTCAAACAGACACCCATACTCACACTGCCTACTCCAGAGAAACAGCAGCAGCCATCTTGCCAAGGGACCTACGATCCTGGGTGTCAGAGGGAACCTATGTTCCAGGAGGGATACAAGAGAAAGCGGTTATCATCGGACAGCAGTGAGGACAGCACAGATTTCAACAACAATATTACCAAACTACTACGGAGGAATAGTGAAATACTAAAAGCCCATCTTGGATCTCAGAGCATTAATTACCAATTGACCAGGGACCAGCAGAAACAGCAAACTGACATCTTAGTTGCAGCCCTCGGCAAGCTCACAGATGCTCTCACAAAAATTGCTGACAAGCTGTAA 1059 0.4551 MAPDSEKICEGAAESPTTPVGRQAPEGDPKSQRIKATRHPRWTRQETLVLIESKKMVENGEQVCRFRSASGFLQTDPKWDMVSSLCQQRGVKRGAVQCRKRWGNLLTDFRKIKKWESGIKEESESFWIMRNDVRKEKKLPGFFDAVVYNVLDGGVCTTVAFPLTLVKMAPKVENGVEGVALEQCKENEDEEEEEEDEAIVDSEKMGWSTEEENTETNITGNMVNGFLKTPGPKVNGTTGSLKQTPILTLPTPEKQQQPSCQGTYDPGCQREPMFQEGYKRKRLSSDSSEDSTDFNNNITKLLRRNSEILKAHLGSQSINYQLTRDQQKQQTDILVAALGKLTDALTKIADKL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2962 352 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 27 352 - -
Ssu5g2962 352 MobiDBLite consensus disorder prediction 184 208 - -
Ssu5g2962 352 Pfam Myb/SANT-like DNA-binding domain 40 129 IPR044822 -
Ssu5g2962 352 ProSiteProfiles Myb-like domain profile. 41 106 IPR001005 -
Ssu5g2962 352 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 27 352 - -
Ssu5g2962 352 MobiDBLite consensus disorder prediction 184 200 - -
Ssu5g2962 352 Coils Coil 181 201 - -
Ssu5g2962 352 MobiDBLite consensus disorder prediction 1 39 - -
Ssu5g2962 352 Gene3D - 42 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2962 Ssu-Chr5 76474796 76477127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2962 41 118 Trihelix Transcription Factor Family AT5G03680 34.177 1.48e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2962 - - gmx:100793052 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2962 5 76474796 76477127 Ssu5g2962 5 76474796 76477127 ECH