Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2961 ATGGATCAGAGGGGTGTTTCTGCTTCATCCCACTTTTTTGATGACATTTCCTTTCGGTCTGAGAGGAATGTTGGATTACGGAAACCAAAATCCATTAATGACCATTACCCACAAGGAAACAATGGAATGGTAGCATCACCCGGTAGCATTTTGAATGCCACACCACCCCTTGATGTAAATGCAAAAGCTGGCTTGCTGATGTCGCAGACTAGTCTACCTGGGGATAATATAGATTCCAAGGAATCATTGCATTATCATCCCAAATCATTGTCTGATGCATGTCTGTGGTCAGCACCTACCTCAAATGGTTTAATTGGGAACAAGACTGTGACCAATGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGCTCCATGTCTGAGATATTTAGCCAAAAGCTAAGGTTACTTGGGAATGGTGTTCTGTCTGATCAGCCCATTACTGCTGGTTCTCCTCCTGTGGAAGAACCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATGCCAGAACAAATGATGATTTTGAAGATTTTGATCTATTTAGTAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATGAGTGGTCTCGATGGAGATTATGGTTTCTTCGGAGGTTCTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAACAGGCCATTGAGGTCTAGGAATCTTGATATACATTATTCAATTCCAAagGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGTCTTGATTCATCAATTTTAAATGATGACCTTAAacagatttttggattttatggaGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCGGAAGATGCTCTTCGTGCATTGAACAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCTCATAAGGGGCAAGATGAACGAGATCTTGGTCAAAGTATTATTGACAACTTATCATTAAGACAAAAGCCAACAGTCTCTTCTGGAGTAATTGGATCTGGTTGCTTGGAAAATGGATATAATCAGAGATTTCAATCTACAGTTCGGCAACCTGTGAATGCATTTATTGATAATGCATTCATTCATGTGAATTCTGGCATTCACAACACTGTGAGAGGGTCATCTGCATCTAGTTCGAGATTTCATCCTCATTCCTTACCTGAGTATTGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCTCCATTAGCAACATGGCTAACAATATAGGTGCTGGAGCTACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAGCTGGGAACTTAGCAGAATTTAATGCGGGAGGAAATGGGATACGCCCACATCATGGGCTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCAAGTACCATGCTTTGGCAGAAAACGCCATCATTTATTAATGATGCTTGCTCTCCAAGCCTTCCACAGATGTCAAGCTTAGCTAGAACACCGCCTCATATGCTGAGAACACCACATATGATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCAAAATTCTTACTTGGGAGGGTCCCCTGAGGCTTCTGGTTTTCGCTTGGGTTCTCTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCACTGGATTTTCCTTCTCACAACGTGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACGTCCAATGCTGGACAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGTGAGACATCCTATGTCTTCAATGTCAAAATTTGATGCTACCAATGAACGAATGAGAAACCTTTATCACCGTAGAAATGAAGCAAGCACCAACAATGTTgataaaaaacaatatgaacTTGACTTGGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACacttatgataaaaaatattcccAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTAAGGGAACTTATGATTTTCTCTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCACCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCACTTGCATATGCCCGAATTCAAGGAAAAGCTTCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGACAAACGTTGCCGTCCTATTCTCTTCCATACAGATGGCCCAAATGCCGGTGATCCGGAGCCTTTCCCCATGGGTGCCAATATTAGACTGAGACCTGGAAAATCACGCACGGCTGGCAACGACGAGAATCGAAGCCAAGGGAGTCCTTCAACTTTGACAAGTGGAGAAGAGTCTGCAAATGGAATAGACTCTTCAAGAAACTCTTAA 2778 0.4075 MDQRGVSASSHFFDDISFRSERNVGLRKPKSINDHYPQGNNGMVASPGSILNATPPLDVNAKAGLLMSQTSLPGDNIDSKESLHYHPKSLSDACLWSAPTSNGLIGNKTVTNAAPCESSLFSSSMSEIFSQKLRLLGNGVLSDQPITAGSPPVEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHARTNDDFEDFDLFSSGGGMEMEGDEHLSSGKRMSGLDGDYGFFGGSKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRNLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSILNDDLKQIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAEDALRALNKIDIAGKQIKLEPGHPSLMHQSHKGQDERDLGQSIIDNLSLRQKPTVSSGVIGSGCLENGYNQRFQSTVRQPVNAFIDNAFIHVNSGIHNTVRGSSASSSRFHPHSLPEYCDSLANGSPYNFSSSISNMANNIGAGATEASDGRHIQGMGSAGNLAEFNAGGNGIRPHHGLYHMWNSSNLQQQPSSSTMLWQKTPSFINDACSPSLPQMSSLARTPPHMLRTPHMMDHHVGSAPVVTASPWERQNSYLGGSPEASGFRLGSLGSGGFHGSWQLHPLDFPSHNVFSHVGGNGTELTSNAGQNSPKQLSHVFPVRHPMSSMSKFDATNERMRNLYHRRNEASTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKSRTAGNDENRSQGSPSTLTSGEESANGIDSSRNS 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2961 925 SUPERFAMILY RNA-binding domain, RBD 246 404 IPR035979 GO:0003676
Ssu5g2961 925 CDD RRM1_MEI2_like 248 323 IPR034453 -
Ssu5g2961 925 Gene3D - 243 332 IPR012677 -
Ssu5g2961 925 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 920 - -
Ssu5g2961 925 Pfam RNA recognition motif 2 754 850 IPR007201 -
Ssu5g2961 925 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 920 - -
Ssu5g2961 925 SUPERFAMILY RNA-binding domain, RBD 756 841 IPR035979 GO:0003676
Ssu5g2961 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 315 IPR000504 GO:0003723
Ssu5g2961 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 401 IPR000504 GO:0003723
Ssu5g2961 925 CDD RRM3_MEI2_like 757 842 IPR034454 -
Ssu5g2961 925 MobiDBLite consensus disorder prediction 896 925 - -
Ssu5g2961 925 SMART rrm1_1 250 318 IPR000504 GO:0003723
Ssu5g2961 925 SMART rrm1_1 756 832 IPR000504 GO:0003723
Ssu5g2961 925 SMART rrm1_1 335 403 IPR000504 GO:0003723
Ssu5g2961 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 322 IPR000504 GO:0003723
Ssu5g2961 925 Gene3D - 333 426 IPR012677 -
Ssu5g2961 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 407 IPR000504 GO:0003723
Ssu5g2961 925 MobiDBLite consensus disorder prediction 865 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2961 Ssu-Chr5 76393006 76399663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2961 244 400 Eukaryotic Initiation Factors Gene Family AT3G16380 25.281 1.06e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2961 - - ccaj:109813669 1709.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2441 1 67940663 67946449 Ssu5g2961 5 76393006 76399663 ECH
Ssu5g2961 5 76393006 76399663 Ssu5g2961 5 76393006 76399663 ECH
Ssu5g2961 5 76393006 76399663 Ssu1g2441 1 67940663 67946449 PCT