LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g2932	ATGGCGGCGAAGTCGAGTTCGGGTTCGGCAACAAGCGTGACGGTGAAGGCGGCGTGGGTTCTCCCGCACCGCACGCAGCACGTCTGCGAGGTGTACGAGGTGGGGCGGAAGCTGGGGCAGGGTCAGTTCGGGACGACGTTCCTGTGCACGCGCCGCGCGAGTGGGGGGGAATTCGCGTGCAAGTCGATTCCGAAGCGGAAGCTGCTGTGCAAGGAGGACTACGAGGACGTGTGGCGGGAGATTCAGATAATGCACCACCTGTCGGAGCACGCGCACGTGGTCCGCATCGAGGGCGCGTACGAGGACGCCTCGGCGGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGGGAGCTCTTCGACAGGATCGTGCGCAAGGGACACTACAGCGAGAGGCAGGCGGCCACGCTCATTAAGACCATCGTTGAGGTTGTCGAGTCGTGCCACTCGCTCGGGGTCATGCACAGGGACCTCAAGCCCGAGAACTTTCTCTTTGATACCGTTGATGAGGATGCTAAGCTTAAGGCCACGGATTTCGGTTTGTCTGTTTTTTACAAGCCCGGTGAATCCTTTTGTGATGTTGTCGGGAGCCCATACTATGTCGCACCAGAGGTCTTGCGCAAGCACTATGGACCTGAATCAGATGTGTGGAGTGCCGGGGTTATTCTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCTGAAACTGAACCCGGGATCTTCCGACAGATTTTACTAGGAAAACTTGATTTCCAATCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTgatcaaaatccaaaaacaaGGCTTACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAACATTGCACCTGATAAACCTCTTGATTCTGCCGTTTTATCACGTCTGAAACAATTCTCTGCAATGAATAAACTGAAAAAGATGGCATTGCGTGTTATTGCTGAGAGGCTATCTGAAGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACGGACGGCAGTGGAACCATAACGTTTGATGAGTTAAAAGATGGCTTGAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCTGTAAGATTTTTTGGAATGCTAGTAACGGTGTAA	1173	0.5158	MAAKSSSGSATSVTVKAAWVLPHRTQHVCEVYEVGRKLGQGQFGTTFLCTRRASGGEFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHAHVVRIEGAYEDASAVHLVMELCEGGELFDRIVRKGHYSERQAATLIKTIVEVVESCHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDGSGTITFDELKDGLKRVGSELMESEIKDLMDAVRFFGMLVTV	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g2932	390	Gene3D	Phosphorylase Kinase; domain 1	34	117	-	-
	Ssu5g2932	390	Pfam	EF hand	338	364	IPR002048	GO:0005509
	Ssu5g2932	390	Pfam	Protein kinase domain	32	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu5g2932	390	Gene3D	-	301	383	-	-
	Ssu5g2932	390	SUPERFAMILY	EF-hand	316	381	IPR011992	-
	Ssu5g2932	390	SUPERFAMILY	Protein kinase-like (PK-like)	13	313	IPR011009	-
	Ssu5g2932	390	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Ssu5g2932	390	ProSitePatterns	EF-hand calcium-binding domain.	346	358	IPR018247	-
	Ssu5g2932	390	SMART	efh_1	337	365	IPR002048	GO:0005509
	Ssu5g2932	390	Gene3D	Transferase(Phosphotransferase) domain 1	118	300	-	-
	Ssu5g2932	390	CDD	EFh	338	381	IPR002048	GO:0005509
	Ssu5g2932	390	ProSiteProfiles	Protein kinase domain profile.	32	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu5g2932	390	PANTHER	BNAA09G05220D PROTEIN	17	380	-	-
	Ssu5g2932	390	SMART	serkin_6	32	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu5g2932	390	ProSiteProfiles	EF-hand calcium-binding domain profile.	333	368	IPR002048	GO:0005509
	Ssu5g2932	390	ProSitePatterns	Protein kinases ATP-binding region signature.	38	61	IPR017441	GO:0005524
	Ssu5g2932	390	PANTHER	SERINE/THREONINE-PROTEIN KINASE	17	380	-	-
	Ssu5g2932	390	CDD	STKc_CAMK	31	289	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g2932	Ssu-Chr5	76028479	76033038	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g2932	20	381	EF-hand Containing Proteins	AT1G35670	78.729	0.0	601

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Ssu5g2932		Pkinase	2.2e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g2932	K13412		-	gmx:100806678	729.939