Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2931 ATGGGTCATTTAGGTGTTTGTCATCAAGTCATGTTCATTGGTCAGCATGAGGAATATGGAAGTAAACTTTCTTCCAGTATTCCTACGGTAGAGAAATCAAAcgatgaagaaaaaaatgttgaacCTATCTTCATgccaaattttaagaaaagaaaacgcCTTAGCCTTAATCGTCTTAGAGAGATTAAAGCAGATATGTGTGGGAGGCAAAGTAGTGGCATGTCTAAAACAAAGAAGCATGAAATCAGAGACAGATGGTCAGCTACGAgGTATAAGTTGGCTGAGCAAAGCATGTGGGAGGTCTTAAAAGATGAAGGTGCAACTTTTGAAAATCCAATTACCCGACCTGCACTAAGAATGGCTGCCCGCAAGCACATTGGTGATACTGGATTATTAGACCACTTACTGAAGCACATTGATGGTAAAGTGGCACCTGGAGGAACTGAGCGGTTTCGACGATGGTTCAACACCAATGGAATCATGGAGTATTGGTTGGAGAGTGCTAATTTGGATGAGATCCGCCAGGAGACTGGGGTGCAAGACCCTTACTGGATACCACCGTCTACATTAAGGGCAGATAGCATTCCTACTCAGAATACTGATTCTATTGGAGAACTGAAAATGCTTAAAATAGAAATGGCCCAGATGAAGAAAGACATGGAAGAGCTCATTGCCAAGAAgcaagaaaaaagtgaaatgtGTTTGATGGAGGAGACACAGAAAAGTTTTGTGAATTGGAAAGCTATGACTGAGGAGCGTGTAACTGAGATTATGACTTCTTTGAAGGGTGTGCAGGGCATGCATGAAGACATGTTGATTTGGAAAACTAAAGTTGAGCAACAGCTAATGGACATAACCAATAAATTGAGCGATGTGCGAACATTGAGAGAACACACCACTTCAAGTTATCCTCCAATAAGATGGGAGGATTGGCTAGAAAGCACCAACCTAGACAATATTCAGGGAAACGAACTTGCACCTTGGTTTGGGAGTCCTGAGCTGCTTAATGTTCCACAAGAGGTTGTACTTCAAGATCCGAACTCAACCCTACCAACTCAGCTGCACAGTGTAGAACTGACTAACATGAAGAGCAATTTGCTGAAGTTGGTGCCAACGAAGCTAAAGGAAGATCAACCTAATGTGACCCCTGATTCTTCTACGACTGTTAATTCAAAGTCAGACCTTGACAATTCATCAATATTGTGTCAGGAAATGTTCATGGAATTATTTGCATCGAGGGATAAAATGGAGCAGCAGTTATTGGAGATATCAAATACTGTATATCGTATGCTGGCAATGAAATAG 1305 0.3969 MGHLGVCHQVMFIGQHEEYGSKLSSSIPTVEKSNDEEKNVEPIFMPNFKKRKRLSLNRLREIKADMCGRQSSGMSKTKKHEIRDRWSATRYKLAEQSMWEVLKDEGATFENPITRPALRMAARKHIGDTGLLDHLLKHIDGKVAPGGTERFRRWFNTNGIMEYWLESANLDEIRQETGVQDPYWIPPSTLRADSIPTQNTDSIGELKMLKIEMAQMKKDMEELIAKKQEKSEMCLMEETQKSFVNWKAMTEERVTEIMTSLKGVQGMHEDMLIWKTKVEQQLMDITNKLSDVRTLREHTTSSYPPIRWEDWLESTNLDNIQGNELAPWFGSPELLNVPQEVVLQDPNSTLPTQLHSVELTNMKSNLLKLVPTKLKEDQPNVTPDSSTTVNSKSDLDNSSILCQEMFMELFASRDKMEQQLLEISNTVYRMLAMK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2931 434 MobiDBLite consensus disorder prediction 378 393 - -
Ssu5g2931 434 PANTHER DYAD PROTEIN 6 433 - -
Ssu5g2931 434 MobiDBLite consensus disorder prediction 374 393 - -
Ssu5g2931 434 PANTHER PROTEIN DYAD 6 433 IPR044221 GO:0007131|GO:0051177|GO:0051321
Ssu5g2931 434 Coils Coil 206 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2931 Ssu-Chr5 76009036 76011176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2931 85 220 PHD Transcription Factor Family AT5G22260 34.043 1.23e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2931 - - gmx:100792586 669.848