Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2928 ATGTCTAGCAAGCTTATCGACTATCGTGGCAGCTTACAAGCCTTCTCTACGCACACGTTGCATGTTTGCATGCATCTCATGGAGAGGAAAACACTTGGGTTTTTGTTCTTGCTCTTCCTTGTCTTGGCTGCTGATGTGGCGGTGAAGACAGCAGAGGCGAGAGATTGCTCGTCAAAAAGCCACGGGTTCAAGGGTGCATGCTTCAGTGACACCAACTGTGCACAGGTATGCAGGAACGAAGGTTTCACCGGCGGCAAATGCACAGGCTTCCGTCACCGTTGCTTTTGCACAAGGATTTGTTGA 303 0.5017 MSSKLIDYRGSLQAFSTHTLHVCMHLMERKTLGFLFLLFLVLAADVAVKTAEARDCSSKSHGFKGACFSDTNCAQVCRNEGFTGGKCTGFRHRCFCTRIC 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2928 100 Pfam Gamma-thionin family 55 100 - -
Ssu5g2928 100 CDD Knot1 65 97 IPR003614 GO:0006952
Ssu5g2928 100 PANTHER DEFENSIN-LIKE PROTEIN 1 27 100 - -
Ssu5g2928 100 PRINTS Purothionin signature 71 84 IPR008176 GO:0006952
Ssu5g2928 100 PRINTS Purothionin signature 55 70 IPR008176 GO:0006952
Ssu5g2928 100 Gene3D - 54 100 IPR036574 -
Ssu5g2928 100 PANTHER DEFENSIN MTDEF4.7 27 100 - -
Ssu5g2928 100 ProSitePatterns Gamma-thionins family signature. 54 77 IPR008176 GO:0006952
Ssu5g2928 100 SUPERFAMILY Scorpion toxin-like 55 100 IPR036574 -
Ssu5g2928 100 SMART gth_4 55 100 IPR003614 GO:0006952
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2928 24 100 Plant Defensins Gene Families AT2G02120 53.247 1.23e-23 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2928 - - gmx:102666433 114.005