Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2922 ATGGATGAAGTTTGGTGGGTAGAGGAAGGAGAAAGAGAGGATGGAGATAGGAAGGagaaagggaagagagagaaggaagggGAAAAGTTGAGGGTGGTGGCATCAGCATTGTCGGTGGCTGCCGAAGGGACGTTATCGATGAGGGTGATAGCGCGGAGGATTTGGACATGTAAAATCACTGGAAAAACTGGCTTGACGTATGAAGAGGCTTTGGTGTCTGAACAACATGCTACTGAGAAAGTTCAACAGTTTCCTAAAGAATTAGTGACTATTGCTTTAAGGATTATTCAATACAGTATGCTTCCTTTAAAGGATCTTGCCGATTCTATTGCTGAAAAATTGCAGGAACGTTTGTTTGTGGGTGCTGAACTACATGGGAAAAAGGATGATGGAGTACATCCatgcaaaatattaaaagtcattCAGAAAGGAGTTGACAAATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAATATAAGTGAAAAAGCAGATGTCAGCGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGtagaaatattttgaagtcttTTATTCGGGAGTCTACATATCGGAATGCCCCTTGGGTTTTACATGATGAACTGGCAAAAAATCATGGGATCTCAACTGACATTCCTGAGGAGTTAAGAGGAAGGGTTTTTTACAAAGATGGGCTTTTAGTTTGctccaagaaaagaaaaaatgaggtAGACAGGGAATCACTGGAAGACACTGATAACTGTAAAAGGAAGAAGTTGGATGAGGCACAAGTCAATGATTCTGGCCAAGTGAAAGAAAATGGCCAACACAAGGATGAAGCAATCAAATACCCCATTGATGATCTGTTGGTGAAGCCTAGTCCAGATGATCCTGTTTTCACTGATCGTCCTTCTCCATCAAAAGACTTCAATATTCCATTGTGTTGTGTTGGGGATCTTTTAATGGTTTGGGATTTTCTTACTTCCTTTGGTAAACTGTTGCACCTGTGCCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGACTTCTCATCAAAGATGACGACGAATACTCTTCGGCTGTGAAGAACCGAAAATTGAAGTCTAAGattACAATGATTAATTGGACAGAATATTTATGCTATTTTCTAGAGATGCTCAATATTCCTGAACTACGGAACTATGAAGCAACTATAAAACGGGGACATTATGGCCTTGTAGATGCCAGTGCTAAATTAGAAATCTTAAGCGAATTGGTCAATCGAGCCCTTGAAACTGCAGTTTTCAGGGAAAAGTTAGATGAGATTATTGAACAGCGGCAGGCACTTGGGGCCACTAGAAGGGAAGAAGCATTGGAAGATGGtaggaggagaagagaagaaaaggagaggTTGAAAGCTGAGTCAGAAAGCAATGGATTTGTGGATGGGCATCATCTGAACGGTGAAAACGTCTTAACGAACAATAATCATGGTATACAAAATGGAGACAcgggagagaagagaaatggagAGATAGAACCATCTGGGCAAAACGATCCATTGGGTAGAAGTGGGATCAAGCATTTAAATCCTGCTTCAAAAAAAACACCGAAGAAGCTAAATTCAGAGCTGAAAGAACCAatggaaaatggaaaagaattaTCCAGAAAGGAATCACCAAAACAGTTGAAGGGTGACAAGGATCCATCAGAGAAGAATAGTAAAGAACAGAGGAAAGAATATTTTGAACGGGAGATGGAGAAACGATTTATTCGTAGTAGCCCATTAGGTAAGGACAGAGATCACAATAGGTATTGGTGGTTCCGTCGTGATGGGAGGATATTTGTTGAAAACTGTGACTCCAAGGCGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTGATGAGTTCACTGAATTGCAAGGGGAGCGGGAAAGGGCACTGCAAAAACaactag 1983 0.3802 MDEVWWVEEGEREDGDRKEKGKREKEGEKLRVVASALSVAAEGTLSMRVIARRIWTCKITGKTGLTYEEALVSEQHATEKVQQFPKELVTIALRIIQYSMLPLKDLADSIAEKLQERLFVGAELHGKKDDGVHPCKILKVIQKGVDKFCYEVAWLDKNKNISEKADVSAEDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRGRVFYKDGLLVCSKKRKNEVDRESLEDTDNCKRKKLDEAQVNDSGQVKENGQHKDEAIKYPIDDLLVKPSPDDPVFTDRPSPSKDFNIPLCCVGDLLMVWDFLTSFGKLLHLCPYSLEDFENAICHKDSNVVLLVESHAALFRLLIKDDDEYSSAVKNRKLKSKITMINWTEYLCYFLEMLNIPELRNYEATIKRGHYGLVDASAKLEILSELVNRALETAVFREKLDEIIEQRQALGATRREEALEDGRRRREEKERLKAESESNGFVDGHHLNGENVLTNNNHGIQNGDTGEKRNGEIEPSGQNDPLGRSGIKHLNPASKKTPKKLNSELKEPMENGKELSRKESPKQLKGDKDPSEKNSKEQRKEYFEREMEKRFIRSSPLGKDRDHNRYWWFRRDGRIFVENCDSKAWGYYSSKEELDALMSSLNCKGSGKGHCKNN 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2922 660 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 47 123 IPR013136 -
Ssu5g2922 660 Coils Coil 461 485 - -
Ssu5g2922 660 MobiDBLite consensus disorder prediction 459 486 - -
Ssu5g2922 660 MobiDBLite consensus disorder prediction 495 510 - -
Ssu5g2922 660 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g2922 660 SMART testlast3 311 370 IPR018501 -
Ssu5g2922 660 MobiDBLite consensus disorder prediction 545 586 - -
Ssu5g2922 660 ProSiteProfiles DDT domain profile. 309 370 IPR018501 -
Ssu5g2922 660 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 598 652 IPR028941 -
Ssu5g2922 660 ProSiteProfiles WAC domain profile. 25 130 IPR013136 -
Ssu5g2922 660 MobiDBLite consensus disorder prediction 459 586 - -
Ssu5g2922 660 Pfam DDT domain 311 367 IPR018501 -
Ssu5g2922 660 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 48 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2922 Ssu-Chr5 75880507 75888725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2922 302 472 PHD Transcription Factor Family AT5G35210 28.177 3.35e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ssu5g2922 WAC_Acf1_DNA_bd 2.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2922 - - gmx:100789956 1048.11