Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2910 ATGGCTACTCCTCCCGTGAATTCGTTGCCAATAGCATACCAACCATGGACGAGTCTAGCAGTACCAGATTGGTTGAACAAAGGAGACAACGCATGGCAAATGGTATCAGCCACCCTCGTGGGGATTCAAAGCATGCCAGGGTTGGTCATCCTCTACGGAAGCATCGTCAAAAAGAAATGGGCCGTGAACTCCGCTTTCATGGCTCTCTACGCTTTTGCGGCGGTTGTCATCTGTTGGGTTACGTGGGCCTACAAGATGTCGTTCGGGGAGAAACTGTTACCCTTTTGGGGCAAAGCTGGGCCCGCGTTGGGCCAGAAATTTCTCACCAAACAGGCGGGCCTGCCCGCCACGCCGCATTACTTTCACAACGGTGGCTTGGAGACCGCTGAGATTGAACCCTTTTATCCCATGGCCACTATGGTGTGGTTCCAGTGTGTTTTTGCCGCCATTACGGTTGTTATCTTGGCTGGGTCTGTGCTGGCTAGGATGAATTTCAAGGCGTGGATGATGTTTGTGCCGCTTTGGGTCACTTTTTCTTACACCATTGGTGCGTTTAGTTTGTGGGGTGGGGGTTTCTTGTTCCAGTGGGGGGTTATGGACTACTCTGGTGGTTATGTCATTCACCTTTCCTCCGGGATTGCTGGCTTCACTGCTGCTTATTGGGTGGGGCCAAGATCGAAGAAGGACAGAGAGAGATTCCCACCAAACAACGTGTTACTAACGTTGGCAGGGGCAGGGCTACTCTGGTTGGGATGGGCAGGTTTCAACGGAGGAGATCCCTACGCGGCCAACACCGACTCATCCATGGCGGTGCTCAACACCAACGTTTGTGCCGCCACCAGCCTCCTCATATGGACGTGGCTCGACgttattttcttcaagaaacCCTCAGTTATTGGAGCCGTTCAGGGCATGATAACTGGTCTTGTTTGCATCACTCCCGGAGCTGGTCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTGCTTTCAGGCAGTGTCCCATGGTTCAGCATGATGGTATTGGGGAAAAAGTTGGCATTGCTTGAAATGGTTGATGACACTCTTGCAGTGTTCCACACTCATGCTGTGGCTGGCCTTCTTGGAGGCATACTCACTGGCCTGTTTGCTGAGCCCCGTCTAAGCACACTCTTTTTACCTGTCACCAACTCCCAAGGAGGAGTCTATGGTGGCCCTGGTGGAGTCAAATCCTTAAACAAATCGTGGGAGGTTTGTTCATCATTGGGTGGAACCTCGTGGCCACTTCAATTATTTGTGTGGTTATAA 1287 0.5144 MATPPVNSLPIAYQPWTSLAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLTKQAGLPATPHYFHNGGLETAEIEPFYPMATMVWFQCVFAAITVVILAGSVLARMNFKAWMMFVPLWVTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNVCAATSLLIWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFSMMVLGKKLALLEMVDDTLAVFHTHAVAGLLGGILTGLFAEPRLSTLFLPVTNSQGGVYGGPGGVKSLNKSWEVCSSLGGTSWPLQLFVWL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2910 428 Pfam Ammonium Transporter Family 31 397 IPR024041 GO:0008519|GO:0016020|GO:0072488
Ssu5g2910 428 SUPERFAMILY Ammonium transporter 24 381 - -
Ssu5g2910 428 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Ssu5g2910 428 PANTHER AMMONIUM TRANSPORTER MEP2 12 407 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu5g2910 428 PANTHER AMMONIUM TRANSPORTER 12 407 - -
Ssu5g2910 428 PRINTS Rhesus blood group protein signature 239 257 IPR002229 GO:0005887
Ssu5g2910 428 PRINTS Rhesus blood group protein signature 270 292 IPR002229 GO:0005887
Ssu5g2910 428 PRINTS Rhesus blood group protein signature 144 160 IPR002229 GO:0005887
Ssu5g2910 428 PRINTS Rhesus blood group protein signature 325 343 IPR002229 GO:0005887
Ssu5g2910 428 Gene3D Ammonium transporter AmtB like domains 13 417 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2910 Ssu-Chr5 75706230 75711621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2910 137 407 Inorganic Solute Cotransporters AT2G38290 73.063 3.99e-135 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2910 K03320 - gmx:100785993 771.155