Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2909 ATGATTGGCTCTGAAAATTCATGGACTAATAATCTAGGGACTCAGCCAGGTGAGTTTTCCTTGGAGATCAAAGAAGTTCATATGTTTCGCCCAAATTTCAGCAGGGGTCCTCTCAAAATATTGACAAGGTGGCTCATATTCCTTACTATCTTGAAAGTCAGTTGCGCTATCAAAGATCCTGATGTAGAAGGTGAAGCTCTGCTTGATCTTTTGCATTTCCTCAATGATTCCAATAAGCAAATGACGGACTGGGACAGTCATTTAGTGAGCCCCTGCTTCAGTTGGTCTCATGTCACTTGTAGAAACGGGCATGTCATATCTCTGGCCCTTGCTTCGGTTGGATTTTCTGGAACAATTTCTCCCTCAATTACCAAATTGAAATATTTGGTTAGCTTGGATTTGCAGAACAACAATCTTTCAGGATCCTTGCCAGATTACATTTCAACCTTGACAGAACTACAATATCTAAATCTTGCtgacaataattttaatggttCTATACCAGCTAAATGGGGTGAACTATCCAATCTAAAGCATCTGGATCTTTCATCTAATGGTCTTACTGGAAGTATCCCTATGCAACTCTTTTTGGTTCCaatgtttaaCTTTTCAGATACGCACCTTCAGTGTGGCCCTGGCTTCGAGAAGTCTTGCACTTCTAAATCTGAAAATCCAGCTTCAACCCACAAATCAAAAGTGGCAAAACTTGTACGTTATGCAAGTTGTGGTGCATTTGCACTTCTGTGTCTTGGGGCTATCTTTACGTATCGACAACATCAAATGCATAGGCGCAAAAGTGAAATCTTTGTCGATGTTTCAGGTGAAGACGAGAGCAAAATTTCTTTAGGGCAATTGAGAAGATTTTCTTGGCGTGAACTCCAACTTGCCACTAAAAATTTCAGTGAAAGCAATGTAATTGGTCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTACTCTCTGATAACACAAAAGTCGCTGTGAAACGCCTCATTGATCATCACAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTAATAAGTGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGCTTCTGCACAACCACAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTAAGTGTAGCATATCGACTGAGAGATTTAAAACCTGGTGAGAAAGGCTTGGACTGGCCAACAAGGAAACGCGTGGCTTTTGGCACAGCCCATGGTTTGGAGTATCTACATGAGCAATGCAATCCTAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTACTAGATGATGAATTTGAAGCTGTTCTGGGTGATTTTGGGCTGGCCAAGCTGGTTGATGCAAGGATGACTCATGTTACCACTCAAGTGCGGGGCACAATGGGTCACATTGCCCCAGAGTATTTGTCCACTGGAAAGTCTTCAGAAAAGACTGATGTCTTCGGATATGGCATAACACTTCTTGAACTAGTCTCCGGTGAGCGTGCAATAGACCTCTCTCGGCTTGAAGATGACGAGGATGTTCTTCTGATTGATCATGTCAAAAAGCTGCTGAGAGAAAATAGGTTGGAGGACATTGTGGACAGAAATTTGGAGAGTTACGATCCAAAGGAAGTTGAGACCATTCTTCAGGTTGCATTACTTTGCACTCAGGGCTTTCCTGAGGATCGTCCAACCATGTCAGAGGTGGTAAAAATGCTGCAGGGAGTGGGGTTAGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGCTACGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAATCTACTCTTGATCAAGAAGCCATACAGCTTTCCAGAGCAAGATAA 1869 0.4195 MIGSENSWTNNLGTQPGEFSLEIKEVHMFRPNFSRGPLKILTRWLIFLTILKVSCAIKDPDVEGEALLDLLHFLNDSNKQMTDWDSHLVSPCFSWSHVTCRNGHVISLALASVGFSGTISPSITKLKYLVSLDLQNNNLSGSLPDYISTLTELQYLNLADNNFNGSIPAKWGELSNLKHLDLSSNGLTGSIPMQLFLVPMFNFSDTHLQCGPGFEKSCTSKSENPASTHKSKVAKLVRYASCGAFALLCLGAIFTYRQHQMHRRKSEIFVDVSGEDESKISLGQLRRFSWRELQLATKNFSESNVIGQGGFGKVYKGVLSDNTKVAVKRLIDHHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTTTERILVYPFMENLSVAYRLRDLKPGEKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVSGERAIDLSRLEDDEDVLLIDHVKKLLRENRLEDIVDRNLESYDPKEVETILQVALLCTQGFPEDRPTMSEVVKMLQGVGLADRWADWQQLEEATNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2909 622 SUPERFAMILY Protein kinase-like (PK-like) 278 574 IPR011009 -
Ssu5g2909 622 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Ssu5g2909 622 PRINTS Leucine-rich repeat signature 129 142 - -
Ssu5g2909 622 PRINTS Leucine-rich repeat signature 174 187 - -
Ssu5g2909 622 SMART serkin_6 300 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2909 622 Gene3D Transferase(Phosphotransferase) domain 1 377 592 - -
Ssu5g2909 622 ProSiteProfiles Protein kinase domain profile. 300 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2909 622 Pfam Leucine rich repeat 129 187 IPR001611 GO:0005515
Ssu5g2909 622 SUPERFAMILY L domain-like 64 197 - -
Ssu5g2909 622 Pfam Leucine rich repeat N-terminal domain 62 100 IPR013210 -
Ssu5g2909 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 40 622 - -
Ssu5g2909 622 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Ssu5g2909 622 PANTHER LRR RECEPTOR-LIKE KINASE 40 622 - -
Ssu5g2909 622 Pfam Protein kinase domain 301 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2909 622 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Ssu5g2909 622 Gene3D Ribonuclease Inhibitor 60 220 IPR032675 -
Ssu5g2909 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2909 Ssu-Chr5 75691207 75696709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2909 45 622 Receptor kinase-like Gene Family AT5G10290 54.380 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu5g2909 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2909 - - gmx:100800886 1125.92