Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2908 ATGAAGGTGAAGAAGGGTTGGCTGGCGGTTCAGGTGGAAGAGGAAGCAGAAGAGGGTGGGGGTGGGTCTCAAAGATTTGAGATCCCAATTTCGTATCTTTATCACCCTCTCTTCAAGCACCTTCTGGACAAGGCTTACGAGGTTTATGGCTACCACACGGAGGGTCCCCTCAAGCTCCCATGTTCGGTTGATGACTTTCTTCATCTCCAATGGAGAATCGAGAAAGAATCCACTACCCATCACCATAACCATAACCATAACCATCATCATCGCCAACTTCCTCACGCCTTGTATTTCCACTCTTGCTAA 309 0.4822 MKVKKGWLAVQVEEEAEEGGGGSQRFEIPISYLYHPLFKHLLDKAYEVYGYHTEGPLKLPCSVDDFLHLQWRIEKESTTHHHNHNHNHHHRQLPHALYFHSC 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2908 102 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 88 IPR003676 GO:0009733
Ssu5g2908 102 PANTHER SMALL AUXIN-UP RNA-RELATED 1 88 - -
Ssu5g2908 102 Pfam Auxin responsive protein 3 72 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2908 Ssu-Chr5 75668322 75668630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2908 3 86 Calmodulin-binding Proteins AT5G20810 41.667 1.10e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2908 K14488 - gmx:100306557 171.014