Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2896 atgGGAGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAGCAGTACGATCTCCTAGGCAAGATTGGCGAAGGCACTTACGGCCTCGTCTTCCTGGCGAGAACAAAGTCTCCCTCTCCCTCCAAATCCATCGCCATCAAGAAGTTCAAGCAGTCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGCGAAATCATGTTGCTCAGGGAGATAACGCACGAGAACGTCGTCAAGCTCGTCAATGTTCACATCAACCACGCCGACATGTCGCTCTACCTCGCGTTTGATTACGCCGAGCACGATCTCTATGAAATTATTAGGCATCACAGGGACAAAGTCAACCATTCCATTAATCAATACACTGTTAAGTCTTTACTCTGGCAGTTGCTCAATGGATTAAGCTATCTGCACAGTAATTGGATGATACATCGAGATTTGAAGCCATCGAATATATTGGTTATGGGTGACGGAGAGGAACACGGAGTTGTTAAGATTGCTGACTTTGGACTTGCAAGGATATATCAAGCTCCTCTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCGCTATTTCAAGGGACAGAAGTCAAAGCTTCATCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAGTCTTCCATATTGGCAACAAGACCTGCAACATATACAAGGACACAAATATGACAACACCAGTCTCTATAATGTTGTGCACCTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGACCCTCGTAAGCGTATAACTGCAGCACAAGCTTTGGAGCATGAGtatttcaaaattgaaccaTTGCCTGGACGGAATGCACTTGTACCCTGTCAACTTGGAGAGAAAATTGTACATTATCCCTCACGTCCAGTGGACACAACAACTGATCTTGAAGGGACAACCAATCTGCCACCTTCACAAACGGCAACTGCAGTTTCTAGCAGCATGCCTGGTGCTCATGGGTCAAATAGATCTGTCCCTCGGCCAATGCATGTTGTAAGAATGCCACCTCAGGCAATGGCAGCTTATAATCTCACGTCTCAGGCAGCCATGggggatggaatgaatcctggGAGTATATCAAAGCAACGAGGTGTTCCACAGGCCCATCAGCCGCAACAGGTTTAG 1320 0.4583 MGDGSGSRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKSPSPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGDGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGTEVKASSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPYWQQDLQHIQGHKYDNTSLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQLGEKIVHYPSRPVDTTTDLEGTTNLPPSQTATAVSSSMPGAHGSNRSVPRPMHVVRMPPQAMAAYNLTSQAAMGDGMNPGSISKQRGVPQAHQPQQV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2896 439 MobiDBLite consensus disorder prediction 357 385 - -
Ssu5g2896 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Ssu5g2896 439 Gene3D Transferase(Phosphotransferase) domain 1 100 343 - -
Ssu5g2896 439 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
Ssu5g2896 439 PANTHER CYCLIN-DEPENDENT KINASE E-1 8 438 - -
Ssu5g2896 439 ProSiteProfiles Protein kinase domain profile. 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2896 439 MobiDBLite consensus disorder prediction 354 393 - -
Ssu5g2896 439 PANTHER CELL DIVISION PROTEIN KINASE 8 438 - -
Ssu5g2896 439 SUPERFAMILY Protein kinase-like (PK-like) 13 328 IPR011009 -
Ssu5g2896 439 SMART serkin_6 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2896 439 ProSitePatterns Protein kinases ATP-binding region signature. 24 50 IPR017441 GO:0005524
Ssu5g2896 439 MobiDBLite consensus disorder prediction 413 439 - -
Ssu5g2896 439 CDD STKc_CDK8_like 17 327 - -
Ssu5g2896 439 Pfam Protein kinase domain 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2896 439 MobiDBLite consensus disorder prediction 425 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2896 Ssu-Chr5 75511781 75526600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2896 1 439 Core Cell Cycle Gene Families AT5G63610 74.890 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Ssu5g2896 Pkinase 5.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2896 K02208 - gmx:100807993 837.41