Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2894 ATGGGCAGAGAAAATGCATCAGCAATGGCAAAGGAAGAAGTCAGTGATGATGGTTCCTCGAGTGTTAAGAGTGGGGATTTAGAGTCTCACGCTCGAATTAGTCTGGACAAGGAGACAGGCTTGGGAACCTGTCGTGTGTGCCAATGTGCTGAATCTGATAAAAGGGCAGATGCTGCGCTAGAATTTTTGGGCATCACTCCAGGTTCAGAAATGTGTAAAAGCAAGGGGGAAGTAGGGTCTGATGGCAATGGAATGCCcaaaaatatgtcttttaacagaaatattgaaaaaaatactgGGATGGTGGAATTTGTGAGCCCGGATGGGGAGGTTTTCATTTGTAAAAGTGATTTGGAACTTGGTTTGTCTCATCAAGATAAATTAGTCGAACTTGGATGTTCTTGTAAAAATGACCTTGCTTTAGTGCATTATGCTTGCGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAATTTCTGACTTCAATAAGGTTGTTGGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACTGCTAGTGGGGATCCTGGTCCTGCACAAGTTCATGCAAATGCTGGTGTGGATCCTGATGCTGTGGCTGCTATCCGCAGACAAAGGCTAAGTGAGATAGCATTATGGTTTTGTCCTCATAATAAcagtaacaataacaatattagCAATATGGACACAGTTTCACAGGTTGTTTCTGAGCAGCCTTCGAATGTTGTTACTGACAATGCTATCCCCGTACAGAATCCTGCAACTAAATGGGCCATAGAGGGTACAGGGATCATGCTTGCTACGGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTCGGAAAGAAAACTGCTAGAAGTGGTCTTCATATCTTACTTGGAGGTGTTTGTGCTTTAGCGGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATATTGTTCGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCAAGGACCCATGGTGCCCATACAACATGA 1086 0.418 MGRENASAMAKEEVSDDGSSSVKSGDLESHARISLDKETGLGTCRVCQCAESDKRADAALEFLGITPGSEMCKSKGEVGSDGNGMPKNMSFNRNIEKNTGMVEFVSPDGEVFICKSDLELGLSHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRISDFNKVVGALKEYEVLRERTASGDPGPAQVHANAGVDPDAVAAIRRQRLSEIALWFCPHNNSNNNNISNMDTVSQVVSEQPSNVVTDNAIPVQNPATKWAIEGTGIMLATGLLTITLAWLIAPRVGKKTARSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2894 361 ProSiteProfiles Zinc finger RING-CH-type profile. 103 169 IPR011016 GO:0008270
Ssu5g2894 361 SUPERFAMILY RING/U-box 126 165 - -
Ssu5g2894 361 MobiDBLite consensus disorder prediction 1 19 - -
Ssu5g2894 361 Pfam RING-variant domain 128 162 IPR011016 GO:0008270
Ssu5g2894 361 SMART ringv_2 113 163 IPR011016 GO:0008270
Ssu5g2894 361 PANTHER ZINC FINGER, RING-CH-TYPE 11 360 - -
Ssu5g2894 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 172 IPR013083 -
Ssu5g2894 361 MobiDBLite consensus disorder prediction 1 28 - -
Ssu5g2894 361 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2894 Ssu-Chr5 75492429 75496422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2894 1 351 C3H Transcription Factor Family AT5G08750 64.266 1.41e-156 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2894 - - gmx:100805323 622.468