Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2893 ATGAGAAGCCTCTGTCTTGGGCCGTTCCTTGCTGTTAGTGCCCCAGTTGGTAGAAGAGCCTTTGGATGCCATTTAACCAGAAAATGCTTTCACAAGCAACTTCACTTCCACTCCCGTTGTGCTGTTTTCTCTTCATACTCATGTTCTGCAACTCTATCAGTGGTACCAGAATTAGAAGAGAAGCAAGTATTTGATGGAGACAAGGCTAATTTGCTTGTTAGAGAGCTCAGAAAGAACTTTGATTCAGGCAGGACAAAGAGCTATGAATGGAGGGTTTCCCAGTTGGAGGCCATAGTTAAGATGttagaagagaaagagaacgaAATTACTGAAGCTCTATATAAGGACCTTTCTAAACCTCAACTTGAAGCATTTATAACTGAGATTTCCCAGGTAAAATCCTCATGTAGTGAAGCACTTCAGGAGCTGAAACACTGGATGAAGCCTGAAAAGgTGAATACTTCAATCACAACATTTCCATCATCTGCAGAGATTGTGCCAGAACCACTGGGGGTTGTGTTGGTCATCTCAACATGGAACTTTCCTTTCTTGTTATCAATGGATCCAGTCATTGGAGCCATTTCTGCTGGTAACACAGTGGTCCTAAAACCATCAGAAATTGCTCCAGCAACATCATCACTGCTTGCAAATTTGATCGAACAATATCTAGACAACTCCGCCATAAGAGTTGTTGAAGGGGCTATTCCTGAAACAACTGCACTCCTGGAGCAGAAGTGGGATAAGATACTTTACACAGGTAGTGCTAGAGTAGGTCGCATTGTCATGGCTGCAGCTGCAAAGCATCTTACACCAGTGATTCTGGAACTTGGAGGAAAGTGCCCAGCTGTTGTTGAATCAGATGTCAACTTACAAGTTACTGCTAGGAGGATAATAGCTGGCAAATGGGCATGCAATAGTGGACAAGCATGCATTTCTGTTGATTATATCATCACAAGAAAAGAGTTTGCTCCAAGGCTGATAAGTGCCTTAAAAGAAGAATTGGAACAATTTTTTGGGAAAGATCCTATGGAGTCAAAAGACATGTCACGAATTGTGTCCCCAAACCAGTTTGCGCGGCTTGTGAACCTCTTGGATGAGGACAAGGTATCTGACAAAATTGTTTTAGGAGGTCAGAGGGACGAGAAGAAATTAAAGATTGCTCCAACTATCCTATTAGATGTTCCTGAAGATGCTATGGTAATGCAAGAGGAGATATTTGGGCCAATATTGCCAATTATCACTGTAGACAACATAGAAGATTGCTACAGTATAATCAAATCAAAGCCAAAACCTCTTGCTGCATATCTCTTCACAAACAATGAGAAGCTAAAGACGGATTATGTGGATAAGATATCTTCTGGAGGGATGCTCATCAATGATGCCGTCATCCATGTTGCAACTCGTGGTTTGCCTTTTGGAGGAGTTGAAGAGAGTGGAATGGGTTGTTACCATGGGAAATTCTCTTTTGATAGTTTCAGCCATAGGAAGTCAGTTCTCTATAGAAGTTTTGATGCAGATTCATCCATAAGGTACCCCCCGTATACACCTCagaaggaaaaattattgaaggccCTTATCAGTGGCaatattgttcaaataattCTTGCTCTTTTTGGATGGTAA 1623 0.4048 MRSLCLGPFLAVSAPVGRRAFGCHLTRKCFHKQLHFHSRCAVFSSYSCSATLSVVPELEEKQVFDGDKANLLVRELRKNFDSGRTKSYEWRVSQLEAIVKMLEEKENEITEALYKDLSKPQLEAFITEISQVKSSCSEALQELKHWMKPEKVNTSITTFPSSAEIVPEPLGVVLVISTWNFPFLLSMDPVIGAISAGNTVVLKPSEIAPATSSLLANLIEQYLDNSAIRVVEGAIPETTALLEQKWDKILYTGSARVGRIVMAAAAKHLTPVILELGGKCPAVVESDVNLQVTARRIIAGKWACNSGQACISVDYIITRKEFAPRLISALKEELEQFFGKDPMESKDMSRIVSPNQFARLVNLLDEDKVSDKIVLGGQRDEKKLKIAPTILLDVPEDAMVMQEEIFGPILPIITVDNIEDCYSIIKSKPKPLAAYLFTNNEKLKTDYVDKISSGGMLINDAVIHVATRGLPFGGVEESGMGCYHGKFSFDSFSHRKSVLYRSFDADSSIRYPPYTPQKEKLLKALISGNIVQIILALFGW 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2893 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 77 496 IPR016162 GO:0016491
Ssu5g2893 540 PIRSF ALDH 53 537 IPR012394 GO:0006081
Ssu5g2893 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 278 478 IPR016163 GO:0016620
Ssu5g2893 540 SUPERFAMILY ALDH-like 72 514 IPR016161 GO:0016491
Ssu5g2893 540 Coils Coil 92 112 - -
Ssu5g2893 540 Pfam Aldehyde dehydrogenase family 67 498 IPR015590 GO:0016491
Ssu5g2893 540 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 3 MEMBER I1, CHLOROPLASTIC 42 540 - -
Ssu5g2893 540 PANTHER ALDEHYDE DEHYDROGENASE 42 540 IPR012394 GO:0006081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2893 Ssu-Chr5 75484918 75489473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2893 16 540 Aldehyde Dehydrogenase Gene Family AT4G34240 65.333 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2893 K00128 - gmx:100800699 995.727