Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2891 ATGCAAGGTGAGCTGGAGTTACCACCCGGGTTCAGATTCCACCCCACCGACGATGAGCTAGTGATTCACTACTTGTGTAGGAAGTGTGCTACCCAGTCCATTGCTGTTCCCATCATcaaagaaattgatttgtataaGTTTGATCCATGGCAGCTTCCAgaAATGGCTCTTTACGGTGAGAAAGAGTGGTACTTTTTCTCCCCGAGGGACCGAAAATACCCAAACGGTTCACGACCGAACCGGGCGGCAGGAACCGGGTACTGGAAGGCGACCGGAGCCGACAAACCGATCGGAAAACCGAAGGCCCTTGGGATCAAGAAGGCCCTTGTGTTCTACGCGGGCAAAGCCCCAAAAGGAGTGAAGACTAATTGGATCATGCACGAGTATCGCTTAGCCAACGTTGATAGATCCGCCTCcaagaaaaacaacaacaacaacttaaggCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAAGGGAAGATTGAGAAGTACAATGGTGTTGGGGTGGTGGATCAGAAAGTAGAAAAGTTTTCAGATGAAGAGGTTCAGTTCCAGCACGAGACCAAGCCCGAGATCAAGATGTACGGCCACGATGATTTCAGGAACGACCAACTGTACATGGACACGTCAGATTCGGTGCCGAGGTTGCACACGGACTCGAGCTGCTCCGAGCACGTGGTTTCGCCGGACGGCACGTGCGAGAAGGAGGTGCAGAGCGAGCCCAAGTGGAACGACCTCGAGTTGGGCCCGGACCCAGTTTCGGGATTCGATTTTCAGTTTAATTTCATGGACCTATCGTCGGATGACCCTTTTGCCCCTCAGGCCCAATACCAAATGAACCAGCTCTCGCCGTGGCAGGATATGTTCTCGTACCTACCCAagacattttga 900 0.4922 MQGELELPPGFRFHPTDDELVIHYLCRKCATQSIAVPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNNNLRLDDWVLCRIYNKKGKIEKYNGVGVVDQKVEKFSDEEVQFQHETKPEIKMYGHDDFRNDQLYMDTSDSVPRLHTDSSCSEHVVSPDGTCEKEVQSEPKWNDLELGPDPVSGFDFQFNFMDLSSDDPFAPQAQYQMNQLSPWQDMFSYLPKTF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2891 299 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Ssu5g2891 299 ProSiteProfiles NAC domain profile. 7 160 IPR003441 GO:0003677|GO:0006355
Ssu5g2891 299 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 275 - -
Ssu5g2891 299 Gene3D NAC domain 16 165 IPR036093 GO:0003677|GO:0006355
Ssu5g2891 299 PANTHER NAC TRANSCRIPTION FACTOR 56 5 275 - -
Ssu5g2891 299 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2891 Ssu-Chr5 75471446 75472924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2891 1 299 NAC Transcription Factor Family AT1G01720 63.123 3.37e-126 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g2891 NAM 5.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2891 - - gmx:100170751 573.548