Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2880 ATGGCGAACAACAAGAGCGCAAAGAAACCAATGAGCCTCAACGACAGTCACTATCGCTTCCTCCAAGACCACTCCGCTCCCCACAAACCCTCCGATGATGTGCCCATCGAAGCCTCAACCAGAAAGCAACAACACGAAAACATCCCCCAATTTTCCGCAATCACCGACTTCGATTCTCCAATCGggcAAAACTCGCACGAGAAACACGAACCAATCAAGGtacatgaagaagaagaaaaagaagcttCATCCAACGACACTCCCCAGTTTTCGGTTAACTCTTCCCTTAggttAAACTTGGACGAGAAACAGGAACCAATCGATGTACATGAAGAAGAAGCTCCACCCAACGATATTCCACAGTTTTCGTTTAACTCTTCCCTTAaggaagaaaagaagacGAAGGTGAAGGTGCAGGGGCGCCGCCGCCTCTGCAAGGTTGTGCATGAAGATGCCGGCAAAACTGCGGCGGTCGATGAGTCCAAGTTTGATGAACTCATCGACCTTGATTCGCCCATTCCGGCACCGAAAAAGGTGATCCAGATTGAGGAGAGTGGGGGCAAGAATGAAATTAGGGATATTTTGAATGAACTGAGCTCCAAGTTTGAGTTGCTATCCGTTGAGAGAAAGCCGAGGCCGAACCATGTTGAGGGTTTGGTTGGAGGGAAAGAAAGTTGTGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCAACCACAGGAGAGTTTGTCAGAGGGTACTAagaatagtggtggtggtggtggtattGAGTATGATTCAGATGACTCTGTTCAAGAGTTGGATCATTTTGAGCCTGAGAATGATGGTTCTATAACTTTGACTGGCCCTAGATCGACTTATAAGTTGCCGGGTAAAATTGCGAAAATGTTGTATCCGCATCAGCAAGATGGGTTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGGGATGACATGGGTTTGGGGAAAACAATGCAGATTTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATCAGAAGGGCATTGGTTGTAGCCCCAAAAACCTTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTTGGTCTATCTGAGAAGACAAGAGAATATTTTGGAACTTCCACAAAACTCAGAGAATACGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGggataattattttgatgatgaGGAAAATGAAGATGGCGCTACATGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTGTCATTAGTGGCACGCCTTTGCAAAATAATCTTAAGGAGTTGTGGGCATTATTTAATTTCTGTTGCCCAGAGTTGCTTGGTGACAAcaaatgGTTCAAAGGAAAATTTGAAACGCCCATACTTCGtggaaatgacaaaaatgcttCTGACAGGGAGAAGCGTATTGGTTCATCTGTAGCAAAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTGAGACGATTGAAGAGTGAGGTTTTCAGTCAAGATGATGATAAAACAACTGCAAAACTTTCTCAGAAGCAAGAGATCATTGTGTGGCTTCGACTGACCAGTGTTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACAattttgaagaaaatatgtGATCATCCACTTCTGTTGACAAAGCGAGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGCTAATGTTGCAGCAAAATTGGCAATGCACATAGCAGATGTTGCAGACACAGATAAGTTTAAAGATGAGCAAGATGTGTCATGCAAAATTTCCTTCATTATGTCATTATTGGATAATTTGATCCCAGAAGGGCATAGCGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTACTATCCAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAAGCCAGTGACAGATTAAGGATTGTTAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTAGGTGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTCGACCGTGCATATCGAATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAGGGAGGATTATTCAAAACTGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAACATACAGTGTAA 2550 0.4106 MANNKSAKKPMSLNDSHYRFLQDHSAPHKPSDDVPIEASTRKQQHENIPQFSAITDFDSPIGQNSHEKHEPIKVHEEEEKEASSNDTPQFSVNSSLRLNLDEKQEPIDVHEEEAPPNDIPQFSFNSSLKEEKKTKVKVQGRRRLCKVVHEDAGKTAAVDESKFDELIDLDSPIPAPKKVIQIEESGGKNEIRDILNELSSKFELLSVERKPRPNHVEGLVGGKESCDDEGLEYGSAGSSFSQPQESLSEGTKNSGGGGGIEYDSDDSVQELDHFEPENDGSITLTGPRSTYKLPGKIAKMLYPHQQDGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGDNYFDDEENEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIVISGTPLQNNLKELWALFNFCCPELLGDNKWFKGKFETPILRGNDKNASDREKRIGSSVAKELRDRIQPYFLRRLKSEVFSQDDDKTTAKLSQKQEIIVWLRLTSVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANVAAKLAMHIADVADTDKFKDEQDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNLIQECLLSKGYDFLRIDGTTKASDRLRIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQHTV 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2880 849 MobiDBLite consensus disorder prediction 101 115 - -
Ssu5g2880 849 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 313 488 IPR014001 -
Ssu5g2880 849 SMART helicmild6 687 770 IPR001650 -
Ssu5g2880 849 PANTHER OS04G0692700 PROTEIN 272 846 - -
Ssu5g2880 849 MobiDBLite consensus disorder prediction 21 40 - -
Ssu5g2880 849 Gene3D - 286 559 IPR038718 -
Ssu5g2880 849 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 661 820 IPR001650 -
Ssu5g2880 849 MobiDBLite consensus disorder prediction 62 84 - -
Ssu5g2880 849 SMART ultradead3 296 501 IPR014001 -
Ssu5g2880 849 MobiDBLite consensus disorder prediction 85 100 - -
Ssu5g2880 849 MobiDBLite consensus disorder prediction 213 265 - -
Ssu5g2880 849 PANTHER SNF2/RAD54 FAMILY MEMBER 272 846 - -
Ssu5g2880 849 CDD SF2_C_SNF 650 781 - -
Ssu5g2880 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 538 IPR027417 -
Ssu5g2880 849 MobiDBLite consensus disorder prediction 41 61 - -
Ssu5g2880 849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 829 IPR027417 -
Ssu5g2880 849 MobiDBLite consensus disorder prediction 213 230 - -
Ssu5g2880 849 MobiDBLite consensus disorder prediction 235 253 - -
Ssu5g2880 849 Pfam Helicase conserved C-terminal domain 658 770 IPR001650 -
Ssu5g2880 849 MobiDBLite consensus disorder prediction 1 135 - -
Ssu5g2880 849 Pfam SNF2-related domain 317 608 IPR000330 GO:0005524|GO:0140658
Ssu5g2880 849 Gene3D - 560 848 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2880 Ssu-Chr5 75291487 75298341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2880 301 824 RAD5 or RAD16-like Gene Family AT1G02670 25.000 6.04e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu5g2880 SNF2_N 7.4e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2880 K20093 - gmx:100779283 1448.72