Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2876 ATGGAAGATGAGAGCCACGGCACTTTGCCAAATGGATTCAACACAGGAAGCCCCGAAAGTCCTTGCTTAAAGACAAGCACCCCCAccacacacaacaacaacaacaacaatcataataataatagcaacaaagAACAGGACCGGTTTCTACCTATTGCCAATGTGGGAAGAATCATGAAAAAAGTGATTCCCCCCAACGGGAAAATCTCCAAGGATGCAAAAGAGACGGTCCAGGAATGTGTATCGGAGTTCATCAGTTTCGTGACTGGGGAAGCATCCGACAAATGCCAAAGGGAAAAGAGAAAGACCATCAATGGGGACGACGTCATATGGGCCATCACAACCTTAGGCTTTGACGATTATGTGGAACCGCTAAAATCCTACCTCCAGAAATTTAAAGAGATAGAAGgagaaaaacttaataatattcCAAAGCAACTACGTTCTGAACAAAGGCTACAACAACACCATAATCAAGACGAAAATAATCAACCATTCAATGGTGCATACACCTCAACAAACCTCGTTTCTCAGCCTCCCTATGTGGCCACTGATCAGAAGTTTTCACTACCCTTCTCCCCAAACTCAATTCAGAATCAGCTACGACAACAAGACCAGATTGATTCAGTGGGACACTGGTAA 642 0.4034 MEDESHGTLPNGFNTGSPESPCLKTSTPTTHNNNNNNHNNNSNKEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFDDYVEPLKSYLQKFKEIEGEKLNNIPKQLRSEQRLQQHHNQDENNQPFNGAYTSTNLVSQPPYVATDQKFSLPFSPNSIQNQLRQQDQIDSVGHW 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2876 213 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 207 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu5g2876 213 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 207 - -
Ssu5g2876 213 MobiDBLite consensus disorder prediction 150 172 - -
Ssu5g2876 213 Gene3D Histone, subunit A 36 170 IPR009072 GO:0046982
Ssu5g2876 213 MobiDBLite consensus disorder prediction 1 47 - -
Ssu5g2876 213 SUPERFAMILY Histone-fold 46 162 IPR009072 GO:0046982
Ssu5g2876 213 MobiDBLite consensus disorder prediction 8 47 - -
Ssu5g2876 213 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Ssu5g2876 213 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Ssu5g2876 213 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Ssu5g2876 213 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu5g2876 213 MobiDBLite consensus disorder prediction 158 172 - -
Ssu5g2876 213 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2876 Ssu-Chr5 75207862 75208503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2876 44 213 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.865 5.39e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu5g2876 CBFD_NFYB_HMF 6.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2876 K08065 - gmx:100778216 372.859