Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2871 ATGCAAAGCTGTGAGGTTGAGGCCATTGGCATAAACTACACGATCCACACACACAAATCGGAGCACCCTTTTAAAATCTTCAGCAAATCTGCACAACTTGACACCGAACAAGATGGTAAAGAGCCAGAAGAGGAAGCAAAAGCAAAAGCTAAACAAAGTTGCAGTGGAGTAAGGCATGTGCTGAAGAATGTGAGTTTCCAAGCCAAGCCATGGGAGATCCTAGCAATTGTTGGGCCAAGTGGAGCTGGCAAATCATCACTGCTTGAGATTCTTGCAGGTAAACATAGCCCTGAAAGTGGGACTGTGTTGGTGAACCACAAGCCTGTGGACAAAGCTCAGTTCAGGAAGCTTTCAGGGTATGTCACACAAAAGGACATTTTGTTTCCTTTACTTACAGTTGAAGAAACACTGATGTTTAGTGCAAAGCTGAGGCTAAAGCTTTCTCAGGAGCAACTTTGCTCCAGGGTCAAGTCACTGATTCAGGAGCTTGGACTCGACCATGTTGCTGGCACTAGAATCGGTGATGATAGGGTCCGAGGCATATCTGGTGGTGAGAGGCGCAGGGTTTCCATTGGTGTTGAAGTCATACATGATCCAAAAGTGCTGATTCTTGATGAACCAACTTCAGGGCTTGACAGCACTTCAGCTTTGCAAATAATTGACATGCTTAAGGTCATGGCTGACACAAGAGGCAGGACTATAATCCTTAGTATCCACCAACCTGGGTTCAGAATAGTGAAGCTGTTCagttcattgttgttgttggccAATGGATGTGTTTTGCACCATGGAACTGCTGATTTGCTTGGTGTGAATCTAAGGTTGATGGGTTTGGAGCTTCCTCTTTATGTTAATGTGGTTGAATTTGCCATTGAGTCCATTGATACCATTCAGCAGCAACATAAATTTCTGCCAGTTCAGGTAGAAACTCCAAGGCAACTGCCAGGGACAATGCAACAGAAGAAAGGTGATGAGGAAGCAGGTAAGGGTAGGAATGGTAAGTTCACTTTGCAACAGCTCCTTCAGCAATCCAAGGTAATTGATGAAGAAATCATGTATGCTGGAATGGATTTCACTTGTGATTTTGCTAATTCTAGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAGAACATATTTCGTACAAAAGAGCTATTTGCATGCAGGACAATTCAGATGCTGGCTTCTGGGTTGGTTGTGGGGTCCATCTTTTGTAATCTTAAGGATGATCTAGTCGGAGCAGAAGAAAGGGTGGGTCTGTTTGCTTTCATATTAACGTTTTTATTGTCAAGCAGCATAGAAGCTCTACCAATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAAACATCTTGTGGAAGCTACCGTGTGTCATCCTATGCTATTGCCAATGGCCTAGTTTACTTGCCATTTCTTCTCATCCTAGCCATTTTGTTCACAATGCCCTTGTACTGGCTTGTTGGTCTCAACCGGAATTTCTTTGCGTTTTTGCACTTTCTGTTGCTGATATTGCTGATTCTTTACACGGCCAATTCAGTTGTGGTGTGTTTCAGTGCTCTGGTGCCTAATTTTATTGTTGGGAATTCAGTGATTGCTGGTGTTATAGGGTCATTCTTCTTGTTCTCTGGATACTTCATATCAAACCATGAAATTCCAAATTACTGGATTTTCATGCATTATATATCCTTGTTTAAGTATCCCTTTGAAGGGTTCCTGATCAACGAGTTCTCCAACTCCGGGAAGTGCTTGGAGTACATGTTTGGGGCATGTATTAAGAGCGGAGAGGATGTGCTTAAAGAAGAAGGGTATGGGGGAGAGAGTAACAGATGGAAGAATGTTGGGGTCACTGTGTGCTTCATATTGGTTTACAGGTTCATTTCTTATGTTATTCTTAGATACAGATGCTCCCAGAGGGGGTTTGGCAGGGTTGTCACCAACTAA 1947 0.4253 MQSCEVEAIGINYTIHTHKSEHPFKIFSKSAQLDTEQDGKEPEEEAKAKAKQSCSGVRHVLKNVSFQAKPWEILAIVGPSGAGKSSLLEILAGKHSPESGTVLVNHKPVDKAQFRKLSGYVTQKDILFPLLTVEETLMFSAKLRLKLSQEQLCSRVKSLIQELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMADTRGRTIILSIHQPGFRIVKLFSSLLLLANGCVLHHGTADLLGVNLRLMGLELPLYVNVVEFAIESIDTIQQQHKFLPVQVETPRQLPGTMQQKKGDEEAGKGRNGKFTLQQLLQQSKVIDEEIMYAGMDFTCDFANSRLRETMILTHRFSKNIFRTKELFACRTIQMLASGLVVGSIFCNLKDDLVGAEERVGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTMPLYWLVGLNRNFFAFLHFLLLILLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSFFLFSGYFISNHEIPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEYMFGACIKSGEDVLKEEGYGGESNRWKNVGVTVCFILVYRFISYVILRYRCSQRGFGRVVTN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2871 648 Pfam ABC-2 type transporter 370 578 IPR013525 GO:0016020|GO:0140359
Ssu5g2871 648 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 282 IPR003439 GO:0005524
Ssu5g2871 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 636 - -
Ssu5g2871 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 267 IPR027417 -
Ssu5g2871 648 Gene3D - 45 288 IPR027417 -
Ssu5g2871 648 SMART AAA_5 70 267 IPR003593 -
Ssu5g2871 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 5 2 636 - -
Ssu5g2871 648 CDD ABCG_EPDR 55 264 - -
Ssu5g2871 648 Pfam ABC transporter 61 209 IPR003439 GO:0005524
Ssu5g2871 648 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2871 Ssu-Chr5 75108969 75110915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2871 59 287 Calmodulin-binding Proteins AT2G36910 22.449 7.40e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2871 K05681 - gmx:100789722 1149.04