Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2869 ATGATGGCTTGTGGAAGTGTCAACCTTCCTCCTGGTTTTTGCTTCTCTCCAACTGATGAAGAACTCGTCCTTCACTTTCTTTATTCCAAGGCTTCTCTACCATGCCACCCCAACATCATTCCAGAGCTTGACCTCTCTCTGCTTGATCCATGGGAATTAAATAGTAAGGCGCTGTCAGGTGGAAATCAACACTATTTCTTCACCAAAGTGAAGGAAAATAGATCCACAGAAAATGGATATTGGAAGGAAATCGGGGTCACAGAACCTATAGTATCCGCCTCTGAAAAAGTGGGGATCAAGAAGTACCTTGTGTTCAACCTTGGTGAAGCTCCACAAGGCACTGAAACTAGTTGGGTCATGCAAGAATATCATATTTGCTCATCCGGGTTAAACACTGCATCTTGTGGAAGTACTCGCGGAAGACGAAAACCCGATCAAAGTAGGAGCAAATGGGTATTGTGCAAAGCGTATGAAAAGAAGAGTTCTCAATCCGAACAAGGTGTAAATTGTTACAGCGATGAGGATGATGACAGCGGAACTGAGCTTTCATGGTTAGACGAATTTTATATGTCGTTAGATGATGATCTTGAAGAAATCATAAGCCTGCCTAATTag 615 0.426 MMACGSVNLPPGFCFSPTDEELVLHFLYSKASLPCHPNIIPELDLSLLDPWELNSKALSGGNQHYFFTKVKENRSTENGYWKEIGVTEPIVSASEKVGIKKYLVFNLGEAPQGTETSWVMQEYHICSSGLNTASCGSTRGRRKPDQSRSKWVLCKAYEKKSSQSEQGVNCYSDEDDDSGTELSWLDEFYMSLDDDLEEIISLPN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2869 204 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Ssu5g2869 204 PANTHER NAC TRANSCRIPTION FACTOR 56 3 199 - -
Ssu5g2869 204 Pfam No apical meristem (NAM) protein 10 125 IPR003441 GO:0003677|GO:0006355
Ssu5g2869 204 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 3 199 - -
Ssu5g2869 204 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Ssu5g2869 204 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2869 Ssu-Chr5 75074778 75075680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2869 2 163 NAC Transcription Factor Family AT1G61110 45.087 6.44e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g2869 NAM 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2869 - - gmx:100779578 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2869 5 75074778 75075680 Ssu5g2869 5 75074778 75075680 ECH