Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2865 ATGAACGAATCTCAAAACACCATTCCCCACTTATTCAGATGCCCCATCAGTTTAGACTTGTTGGAAGATCCTGTAACTTTATGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGCTTGCTGCAGGTAACCTCACATGTCCAGTCACAATGCAAAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTGGGTCCCCAATTCGACCCTGGTAACTCCGAAACTTCAACTATTGACTCCTTAGCTTCTCTGAAACGCAACCTTGAATCCCATGAAAGCAGCTTAGAAACCAAGCTCCAAGCACTCACCAAAATCAGTCTCTTATCTGATGAGTATTGTTCCTTTAAGAAATCATGCTTCCTCCAATTGGAATTCCTACCACTGCTTTTGGAACTAGTTTTTGGAAGAACAGAAAGTCAAGTATCAAAAAATGACATGAACTTCATAGAGTTAGCACTTTGTTGCATTCGAAAATTGCTGCCTCTTGGTAGTTTGGAGCCTCTAAATAAGATCAAAGATGGGTCTAAATTAGCCACGTTTGTGCTGTTATTTGAAAAGGGCACTAACTCGGTTAAGACTAGCTTGTGCCGTGTTATAGAGTCAACTGCATCATCATCTGAGACAGAAGATTTATGTTCCATTCTTGGAAATTCTCACAAACTAGTGCACGAGATTGTTCAAGTTGTTAACCAAAATCACGAGGTTTCTGGGGATGCAATTAAAGCCATGTCAGCACTATGTTCCTTGCAATCTAACAGAGAGAGTTTGCTGAGAGGAGGGGCAATAGATGGGATTATGAGATACATTTCATCAGAAAGAAGATACTTGGCACCAATTGCAATGAGAATAGTTGAGAAACTTATGGGCCTAGAAAGTGCTAGAGAGGCATTTGTGAATCACCCTAATGGTGTTCAAACTTTGGTGAATATGGTTTTCAGGGTATCTGATCAAGAATGCAGTGAGAGTGCTGTTGAGGTGCTTTTAACTGTTTGTGGTGAATTTGGGCGAGCAAGAGAGGAAGCCATTGAGGGTGGAGTTTTGACTCGGTTGCTATTGCTTCTGCAGAGTcagtgtagcaacacaacaaaatCAAAGGCTAGAATGCTGCTCAAATTGCTAAGATCCGATCCAGCCAAAGCAGGGTTAGActgtcaataa 1197 0.4085 MNESQNTIPHLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPQFDPGNSETSTIDSLASLKRNLESHESSLETKLQALTKISLLSDEYCSFKKSCFLQLEFLPLLLELVFGRTESQVSKNDMNFIELALCCIRKLLPLGSLEPLNKIKDGSKLATFVLLFEKGTNSVKTSLCRVIESTASSSETEDLCSILGNSHKLVHEIVQVVNQNHEVSGDAIKAMSALCSLQSNRESLLRGGAIDGIMRYISSERRYLAPIAMRIVEKLMGLESAREAFVNHPNGVQTLVNMVFRVSDQECSESAVEVLLTVCGEFGRAREEAIEGGVLTRLLLLLQSQCSNTTKSKARMLLKLLRSDPAKAGLDCQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2865 398 PANTHER OS02G0542800 PROTEIN 7 388 - -
Ssu5g2865 398 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Ssu5g2865 398 SUPERFAMILY RING/U-box 4 76 - -
Ssu5g2865 398 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Ssu5g2865 398 PANTHER WDSAM1 PROTEIN 7 388 IPR045185 GO:0061630
Ssu5g2865 398 Gene3D - 297 395 IPR011989 -
Ssu5g2865 398 Coils Coil 94 114 - -
Ssu5g2865 398 CDD RING-Ubox_PUB 12 54 IPR045210 -
Ssu5g2865 398 Gene3D - 87 296 IPR011989 -
Ssu5g2865 398 SUPERFAMILY ARM repeat 97 387 IPR016024 -
Ssu5g2865 398 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Ssu5g2865 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2865 Ssu-Chr5 75030984 75032180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2865 8 387 U-box Gene Family AT1G49780 31.807 1.51e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2865 - - gmx:100805322 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2865 5 75030984 75032180 Ssu5g2865 5 75030984 75032180 ECH