Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2862 ATGCCGGCTTGGTGGAGCAGAAAGTGGAGCAAGAGCAAGGAGGAGCACGAGGAGGTGGAGGAGGATGAGGAGGAAGAGCCACGTGGCGGTTTTCAATTGAATTTCATGAAATCACCGGTCACCGTTCGGAGCGGTGACAGGGACAAGAACAAGAGTAAGAAGACGACGACGAAGAAGAAGCCGAAGAGTTTCGACGAGAAGCTGAAAGGGGTTCCGTTGCCTCGTCCCACGCACAGTCAGAGCGACCAAATGTTTGGATCTCTTTCGATGTCGGGTTCCAGCGTCAGTTCCTCCAACTCCTTCGATGATCACCCAATTTCGCCTCAGTTTAATGCCATCAGAGGACAAGATGAGGTGAGGTTCAATGTGAGGTCAAAAAGTCCAGGTCCTGGGTCAAGAGGACCTACCAGTCCTACCTCAGCGCTTCATCCAAGGTTGCATGTTTTGAGACTTGACTCTCCTACGGGGAAGCAAGACGAGGGAAGCAGTAAATGTCATCCCTTGCCCCTTCCGCCGGGCTCTCCAACTAGTCCTTCTTCTGTACTTTCGAACACCCGAGCAAATGGACCGTTGGAAAGCCCTACCAGCAATGTGTCCAAATGGAGAAAAGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTATATCTGGGATTCAATAgTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTCCGATGATCAAACATCAAGAGAGTGCCTCAAACAACTTAACCagGAGATAAATTTGCTAAATCAGCTTTCACACCCAAATATTGTTCAATACTACGGGAGTGAACTGGTAGAAGAATCACTTTCTGTATATTTGGAATATGTTTCTGGTGGTTCTATCCATAAATTACTTCAGGAGTATGGTCCATTTAAGGAGCCTGTTATTCAAAATTATGCCAGGCAGATTGTCTCTGGACTTGCCTATCTGCATGGCAGAAATACAGTACACAGGGATATCAAAGGGGCGAACATACTAGTTGATCCTAATGGTGAAATCAAACTGGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCGATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATACTCTTCCAGTTGATATATGGAGCTTGGGATGCACAATTATTGAAATGGCAACATCAAAACCTCCTTGGAGTCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCCGAGCATCTTTCAAATGAGGCGAAGAATTTCATCAAGCAATGCTTACAAAGGGACCCATTAGCTCGCCCAACAGCCCAAAAGTTACTAGACCACCCCTTCATTCAAGATCAGTCAGCAACAAAAGCTGCAAATGTCAGCATAACCAGAGATGCTTTCCCTTACATGTTTGATGGAAGCCGGACACCGCCTGTGTTAGAGTCTCATTCCAATCGAACAAGTATAACCTCACTTGATGGAGATTATGCATCAAAGCCAGCTTTTACAGCTGCACGTGCAATAAGGAGTCCAAGagataacacaagaatgATCACATCTTTACCAGTATCTCCTTCTTCAAGTCCATTGCGACGGTTCGGGCCAACACATCAGAGCTGTTTCTTTTCTCCTCCTCATCCAGCGTACACAATAATGGGACAAAATAGTTACACTTTGAATGACATGTCCTCATATCCAGTGAGATCAAATTCCCCGTTCACTCTTGATCCTTGGCTTGAAACATCTCGATACAAAGCCAATACACCACCTGGTGGATCTCCAAGAATGAGACTCATTTGA 1824 0.4474 MPAWWSRKWSKSKEEHEEVEEDEEEEPRGGFQLNFMKSPVTVRSGDRDKNKSKKTTTKKKPKSFDEKLKGVPLPRPTHSQSDQMFGSLSMSGSSVSSSNSFDDHPISPQFNAIRGQDEVRFNVRSKSPGPGSRGPTSPTSALHPRLHVLRLDSPTGKQDEGSSKCHPLPLPPGSPTSPSSVLSNTRANGPLESPTSNVSKWRKGKLLGRGTFGHVYLGFNSENGQMCAIKEVKVVSDDQTSRECLKQLNQEINLLNQLSHPNIVQYYGSELVEESLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYARQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYTLPVDIWSLGCTIIEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNEAKNFIKQCLQRDPLARPTAQKLLDHPFIQDQSATKAANVSITRDAFPYMFDGSRTPPVLESHSNRTSITSLDGDYASKPAFTAARAIRSPRDNTRMITSLPVSPSSSPLRRFGPTHQSCFFSPPHPAYTIMGQNSYTLNDMSSYPVRSNSPFTLDPWLETSRYKANTPPGGSPRMRLI 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2862 607 Gene3D Transferase(Phosphotransferase) domain 1 198 477 - -
Ssu5g2862 607 CDD STKc_MEKK1_plant 200 457 - -
Ssu5g2862 607 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 588 - -
Ssu5g2862 607 MobiDBLite consensus disorder prediction 177 198 - -
Ssu5g2862 607 MobiDBLite consensus disorder prediction 76 106 - -
Ssu5g2862 607 MobiDBLite consensus disorder prediction 1 198 - -
Ssu5g2862 607 SUPERFAMILY Protein kinase-like (PK-like) 199 533 IPR011009 -
Ssu5g2862 607 ProSitePatterns Protein kinases ATP-binding region signature. 207 230 IPR017441 GO:0005524
Ssu5g2862 607 Pfam Protein kinase domain 202 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2862 607 ProSiteProfiles Protein kinase domain profile. 201 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2862 607 PANTHER MAP KINASE KINASE KINASE 1 588 - -
Ssu5g2862 607 SMART serkin_6 201 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2862 Ssu-Chr5 75002819 75007913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2862 1 520 MAP Kinase Kinase Kinase AT1G53570 57.856 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu5g2862 Pkinase 3.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2862 K04421 - gmx:100787064 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2862 5 75002819 75007913 Ssu5g2862 5 75002819 75007913 ECH
Ssu5g2862 5 75002819 75007913 Ssu1g2562 1 70151017 70156418 PCT