Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2858 ATGGCTGTAACAAAATTGATACCGGGGTTTCGATTCCACCCCACTGGCGTTGAGTTGGTTGTTTACTTTCTGAAGAGGAAAGTGATGGGGAAAAAGTTCAGTGATGGTGTTATTGCTGAACTTGACATATACAAGTTTGCTCCTTGGGATCTCCCAGATAAGTCTTGTCTGAGAAGTGGGGAATTGAATTGGTACTTCTTCTGCTCGACAGAGAAGAAATATGGCAGTGGGAGCAGGATGAAGCGAGCTACTGAAATTGGGTATTGGAAAGCTACTGGGAAGGATAGAGTTGTTCGGCACAATAATCGAACTGTTGGGATGATAAAAACACTGATATTTCACACGGGTAAATCGCCTCATGGCAAAAGAACAGATTGGGTTATGCACGAGCATAGGCTTGAAGATAAGAACCTCGATGACAAGGGGATCGCTCAGGATTCCTATGTGGTCTGCAAGGTATTCCAAAAGGAAGGTGTGGGTCCCAGGAATGGTGCGCAGTATGGGAGACCATTTAATGAGGAAGAGTGGGACGATGAAGAACTGGGAATACCTTGTGCTGCTTCGACTGCACCAGTTCCCATCTTGCCTGTGACGCCTGATGGCTCTGTTCCAAATGACAATCATCTCCCTGCTAGTGGATGTATTGGATCAACATCCACTTCATGTCTATCAGGATCAATGCCTACTCCTGGCACAGTAAATCCTTCTGATCCAAATGATCAAGCTGtcaacaatgatgatgatgatattttatcaatgcttgaaatttttaaagatgATGACAAATTGTTTGAGAAGGTTGATAATCCTGGTCAAGAAAACATTGCTGAAGGTGCAGCTTCAGATGATTTTTTTGAGGGCTTGGAAGACTACTGGGCAGCGTGGGCTGGTTTCTCCTCTGGCCAGAATACTGAATTTAGCACAAACGGAATGGCTACTACAGGTGATGTCGGGAGCTCTGACAACTTGGACTTCCTAGAGTTGATTGACCTAGACACTCCATTGTTCTGGCCGACTACACAACCTTGA 1029 0.4344 MAVTKLIPGFRFHPTGVELVVYFLKRKVMGKKFSDGVIAELDIYKFAPWDLPDKSCLRSGELNWYFFCSTEKKYGSGSRMKRATEIGYWKATGKDRVVRHNNRTVGMIKTLIFHTGKSPHGKRTDWVMHEHRLEDKNLDDKGIAQDSYVVCKVFQKEGVGPRNGAQYGRPFNEEEWDDEELGIPCAASTAPVPILPVTPDGSVPNDNHLPASGCIGSTSTSCLSGSMPTPGTVNPSDPNDQAVNNDDDDILSMLEIFKDDDKLFEKVDNPGQENIAEGAASDDFFEGLEDYWAAWAGFSSGQNTEFSTNGMATTGDVGSSDNLDFLELIDLDTPLFWPTTQP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2858 342 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Ssu5g2858 342 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Ssu5g2858 342 PANTHER PLANT NAC DOMAIN PROTEIN 1 234 - -
Ssu5g2858 342 PANTHER PLANT NAC DOMAIN PROTEIN 239 332 - -
Ssu5g2858 342 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Ssu5g2858 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 234 - -
Ssu5g2858 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 239 332 - -
Ssu5g2858 342 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2858 Ssu-Chr5 74895344 74898046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2858 1 264 NAC Transcription Factor Family AT5G09330 49.825 4.34e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g2858 NAM 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2858 - - gmx:100778933 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2858 5 74895344 74898046 Ssu5g2858 5 74895344 74898046 ECH
Ssu5g2858 5 74895344 74898046 Ssu1g2566 1 70253653 70260046 PCT