Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2851 ATGGACACCAGCCAGAACCCCACTAGTGCATTCACAAATGTGAACAGCACTTGGAATCTTGAAAAGATGGAAACAAAtgaacagcaacaacaacaacatgacCATATTATTCTCCAAGTCCAAGACCCTATGGGTTCTGGGATTTGGCCCAACAACTACCACCACAACCTTCTTCAAATGCACCAAACACCCCCCACAACATCATCCATCATAGCACCACCCTCCTCTTCGGGGTTCCTCAGTGACATGCTGGGCGTGCACAGCATAGAAGAAGACGAAGAGCCAGAAGAGGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATCGCCGCTATGCAGCCAGTGGACATCGACCCCGCCACTATCCGAAAACCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGTGAGAAAATCCGCATCCTCCAAAGACTTGTTCCTGGAGGAACCAAAATGGACACCGCTTCAATGCTTGATGAAGCCATTCGCTATGTTAAGTTCTTGAAGAGACAAATCCGGTTGCTCCAATCCATTCCTCAAACTTCACAACCACCACAATGCGTTGGCGTTGCCACTACTCATCATGCTAATACCTTGTTATTAGCCCCTACTTGTGATTGGCCTTTTGCACCACCAAATGTGTTGCTCAGTTCCACCGCcgcctcctcctcctccatgGACATGCCGGCCGGACTCGGGTTCGAGGGCCATGGTCGTGCTTGTGATGGCTCCTCCAGCTTTAATCAGCATCAGGTAATCAGTGAATAA 807 0.4721 MDTSQNPTSAFTNVNSTWNLEKMETNEQQQQQHDHIILQVQDPMGSGIWPNNYHHNLLQMHQTPPTTSSIIAPPSSSGFLSDMLGVHSIEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPQTSQPPQCVGVATTHHANTLLLAPTCDWPFAPPNVLLSSTAASSSSMDMPAGLGFEGHGRACDGSSSFNQHQVISE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2851 268 Gene3D - 135 197 IPR036638 GO:0046983
Ssu5g2851 268 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 250 - -
Ssu5g2851 268 CDD bHLH_AtIND_like 133 190 - -
Ssu5g2851 268 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 250 IPR045843 GO:0003700|GO:0006355
Ssu5g2851 268 Pfam Helix-loop-helix DNA-binding domain 142 181 IPR011598 GO:0046983
Ssu5g2851 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Ssu5g2851 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 195 IPR036638 GO:0046983
Ssu5g2851 268 SMART finulus 138 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2851 Ssu-Chr5 74787453 74788259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2851 101 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 78.351 6.04e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g2851 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2851 - - aprc:113856609 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2851 5 74787453 74788259 Ssu5g2851 5 74787453 74788259 ECH
Ssu5g2851 5 74787453 74788259 Ssu1g2577 1 70567127 70567861 PCT